PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	2	CH_ath_40	11	29	0.0000000000000490167
Arabidopsis thaliana	3	2	CH_ath_89	11	68	0.00000000182721
Arabidopsis thaliana	3	2	CH_ath_34	13	52	0.0000000000000187111
Arabidopsis thaliana	1	3	CH_ath_48	11	29	0.0000000000000490167
Arabidopsis thaliana	3	3	CH_ath_101	11	68	0.00000000182721
Arabidopsis thaliana	3	3	CH_ath_41	13	52	0.0000000000000187111
Arabidopsis thaliana	1	5	CH_ath_17	11	29	0.0000000000000490167
Arabidopsis thaliana	3	5	CH_ath_26	19	296	0.0000000000437545
Arabidopsis thaliana	1	6	CH_ath_24	11	29	0.0000000000000490167
Arabidopsis thaliana	3	6	CH_ath_31	19	296	0.0000000000437545
Brassica rapa	A01	2	CH_bra_166	4	5	0.0000673855
Brassica rapa	A03	2	CH_bra_145	6	23	0.0000227123
Brassica rapa	A01	3	CH_bra_207	4	5	0.0000673855
Brassica rapa	A03	3	CH_bra_177	6	23	0.0000227123
Capsella rubella	scaffold_1	2	CH_cru_235	4	4	0.000119871
Capsella rubella	scaffold_1	3	CH_cru_273	4	4	0.000119871
Capsella rubella	scaffold_3	5	CH_cru_66	16	289	0.0000738646

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V