PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0010181
Description: FMN binding

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00071	1	CH_atr_46	5	7	0.000000000403772
Arabidopsis lyrata	scaffold_5	1	CH_aly_232	3	7	0.000847433
Brassica rapa	A01	1	CH_bra_192	4	24	0.000880403
Chlamydomonas reinhardtii	chromosome_10	2	CH_cre_18	4	4	0.0000000883917
Chlamydomonas reinhardtii	chromosome_10	3	CH_cre_28	4	4	0.0000000883917
Citrullus lanatus	Chr7	1	CH_cla_115	3	3	0.0000397079
Citrullus lanatus	Chr7	2	CH_cla_129	3	3	0.000048847
Citrullus lanatus	Chr7	3	CH_cla_175	3	3	0.0000711242
Cucumis melo	CM3.5_scaffold00054	1	CH_cme_135	3	4	0.0000913451
Cucumis melo	CM3.5_scaffold00054	2	CH_cme_168	3	4	0.000128364
Cucumis melo	CM3.5_scaffold00054	3	CH_cme_257	3	4	0.000157899
Eucalyptus grandis	scaffold_3	1	CH_egr_23	11	12	6.8543e-28
Eucalyptus grandis	scaffold_3	2	CH_egr_31	11	12	1.66369e-27
Eucalyptus grandis	scaffold_3	3	CH_egr_41	11	12	3.77796e-27
Eucalyptus grandis	scaffold_3	4	CH_egr_28	11	12	6.8543e-28
Eucalyptus grandis	scaffold_3	5	CH_egr_35	11	12	1.66369e-27
Eucalyptus grandis	scaffold_3	6	CH_egr_40	11	12	3.77796e-27
Fragaria vesca	LG1	1	CH_fve_33	5	5	0.0000000000313049
Fragaria vesca	LG3	1	CH_fve_27	6	10	0.00000000000588708
Fragaria vesca	LG3	2	CH_fve_39	6	10	0.0000000000100097
Fragaria vesca	LG3	3	CH_fve_59	6	10	0.0000000000190124
Glycine max	Gm08	1	CH_gma_47	6	8	0.00000000000807678
Glycine max	Gm08	2	CH_gma_61	6	8	0.0000000000130991
Glycine max	Gm08	3	CH_gma_81	6	8	0.0000000000332132
Gossypium raimondii	Chr10	1	CH_gra_187	3	3	0.0000607625
Gossypium raimondii	Chr10	2	CH_gra_221	3	3	0.0000788928
Gossypium raimondii	Chr10	3	CH_gra_284	3	3	0.00011234
Lotus japonicus	chr1	1	CH_lja_30	4	9	0.000000685745
Lotus japonicus	chr1	2	CH_lja_41	4	9	0.000000685745
Lotus japonicus	chr1	3	CH_lja_62	4	9	0.00000121701
Malus domestica	10	1	CH_mdo_22	6	18	0.00000000137624
Malus domestica	15	1	CH_mdo_114	4	11	0.0000222874
Malus domestica	10	2	CH_mdo_24	6	18	0.00000000176235
Malus domestica	15	2	CH_mdo_133	4	11	0.0000261928
Malus domestica	10	3	CH_mdo_42	6	18	0.00000000349878
Malus domestica	15	3	CH_mdo_185	4	11	0.0000410165
Medicago truncatula	chr5	1	CH_mtr_31	8	15	3.97583e-18
Medicago truncatula	chr5	2	CH_mtr_41	8	15	9.15911e-18
Medicago truncatula	chr5	3	CH_mtr_71	8	15	7.33248e-17
Medicago truncatula	chr8	3	CH_mtr_488	4	11	0.0000104516
Oryza sativa ssp. japonica	6	1	CH_osa_55	6	9	0.000000000000253813
Oryza sativa ssp. japonica	6	2	CH_osa_54	6	9	0.000000000000356171
Oryza sativa ssp. japonica	6	3	CH_osa_64	6	9	0.00000000000066541
Populus trichocarpa	Chr03	1	CH_ptr_303	3	4	0.000241105
Populus trichocarpa	Chr13	1	CH_ptr_141	4	4	0.0000000661005
Prunus persica	scaffold_1	1	CH_ppe_19	8	8	3.35353e-20
Prunus persica	scaffold_1	4	CH_ppe_50	10	219	0.00000000116539
Prunus persica	scaffold_1	5	CH_ppe_54	10	219	0.00000000324869
Prunus persica	scaffold_1	6	CH_ppe_72	10	219	0.00000000446743
Ricinus communis	29727	1	CH_rco_39	5	7	0.000000000961888
Ricinus communis	29727	2	CH_rco_42	5	7	0.0000000017361
Ricinus communis	29727	3	CH_rco_66	5	7	0.00000000248356
Solanum lycopersicum	ch03	1	CH_sly_180	4	5	0.00000042172
Solanum lycopersicum	ch04	1	CH_sly_295	3	3	0.0000700674
Solanum lycopersicum	ch03	2	CH_sly_187	4	5	0.000000461873
Solanum lycopersicum	ch04	2	CH_sly_324	3	3	0.0000749559
Solanum lycopersicum	ch03	3	CH_sly_126	5	5	0.000000000172218
Solanum lycopersicum	ch04	3	CH_sly_440	3	3	0.000096781
Solanum tuberosum	chr03	1	CH_stu_136	5	5	0.0000000000855807
Solanum tuberosum	chr11	1	CH_stu_156	5	6	0.000000000512995
Solanum tuberosum	chr03	2	CH_stu_154	5	5	0.00000000010802
Solanum tuberosum	chr03	3	CH_stu_222	5	5	0.000000000204806
Theobroma cacao	scaffold_2	1	CH_tca_94	4	4	0.0000000497696
Theobroma cacao	scaffold_6	1	CH_tca_211	3	3	0.0000456262
Theobroma cacao	scaffold_6	1	CH_tca_243	3	4	0.000182349
Theobroma cacao	scaffold_2	2	CH_tca_109	4	4	0.0000000701631
Theobroma cacao	scaffold_6	2	CH_tca_299	3	4	0.000235016
Theobroma cacao	scaffold_6	3	CH_tca_371	3	4	0.000254594
Vitis vinifera	chr18	1	CH_vvi_40	7	8	9.51468e-16
Vitis vinifera	chr18	2	CH_vvi_41	7	8	0.00000000000000175295
Vitis vinifera	chr18	3	CH_vvi_59	8	11	2.66098e-16

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V