PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_5	2	CH_aly_329	3	3	0.00072644
Arabidopsis lyrata	scaffold_5	3	CH_aly_385	3	3	0.00072644
Arabidopsis thaliana	2	2	CH_ath_419	3	3	0.000759286
Arabidopsis thaliana	2	3	CH_ath_439	3	3	0.000759286
Brassica rapa	A10	2	CH_bra_31	6	6	0.0000000000692729
Brassica rapa	A10	3	CH_bra_39	6	6	0.0000000000723067
Capsella rubella	scaffold_5	2	CH_cru_161	4	4	0.00000296936
Capsella rubella	scaffold_5	3	CH_cru_185	4	4	0.00000296936
Medicago truncatula	chr2	2	CH_mtr_352	4	6	0.00000194868
Medicago truncatula	chr2	3	CH_mtr_424	4	6	0.00000194868
Thellungiella parvula	ch6-6	2	CH_tpa_83	4	4	0.00000335176
Thellungiella parvula	ch6-6	3	CH_tpa_98	4	4	0.00000335176

GO term	Description	Number of clusters
GO:1900056	negative regulation of leaf senescence	11

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V