PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	1	CH_aly_116	4	11	0.00000219871
Arabidopsis lyrata	scaffold_1	2	CH_aly_151	4	11	0.00000219871
Arabidopsis lyrata	scaffold_1	3	CH_aly_170	4	11	0.00000219871
Arabidopsis lyrata	scaffold_1	7	CH_aly_4	4	11	0.00000278018
Arabidopsis lyrata	scaffold_1	8	CH_aly_5	4	11	0.00000278018
Arabidopsis lyrata	scaffold_1	9	CH_aly_7	4	11	0.00000278018
Carica papaya	supercontig_26	3	CH_cpa_87	4	7	0.00000046462
Cucumis melo	CM3.5_scaffold00044	3	CH_cme_175	3	3	0.0000155659
Eucalyptus grandis	scaffold_11	1	CH_egr_570	3	6	0.000334924
Eucalyptus grandis	scaffold_11	2	CH_egr_724	3	6	0.000334924
Eucalyptus grandis	scaffold_11	3	CH_egr_528	4	8	0.00000114502
Medicago truncatula	chr4	1	CH_mtr_194	4	7	0.0000000268276
Medicago truncatula	chr4	2	CH_mtr_228	4	7	0.0000000268276
Medicago truncatula	chr4	3	CH_mtr_290	4	7	0.0000000321919
Solanum tuberosum	chr07	1	CH_stu_336	3	4	0.0000258547
Solanum tuberosum	chr07	2	CH_stu_367	3	4	0.0000258547
Solanum tuberosum	chr07	3	CH_stu_517	3	4	0.0000299364
Thellungiella parvula	ch5-7	1	CH_tpa_150	3	9	0.000904202
Thellungiella parvula	ch5-7	2	CH_tpa_230	3	9	0.000904202
Thellungiella parvula	ch5-7	3	CH_tpa_266	3	9	0.000904202

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V