Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0009960
- Description
- endosperm development
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_5 | 2 | CH_aly_193 | 3 | 3 | 0.0000242774 |
Arabidopsis thaliana | 1 | 2 | CH_ath_13 | 12 | 16 | 4.36179e-25 |
Arabidopsis thaliana | 2 | 2 | CH_ath_203 | 4 | 5 | 0.00000405121 |
Arabidopsis thaliana | 3 | 2 | CH_ath_119 | 6 | 16 | 0.0000000289039 |
Arabidopsis thaliana | 5 | 2 | CH_ath_204 | 4 | 5 | 0.00000405121 |
Arabidopsis thaliana | 1 | 3 | CH_ath_14 | 12 | 16 | 4.36179e-25 |
Arabidopsis thaliana | 2 | 3 | CH_ath_213 | 4 | 5 | 0.00000405121 |
Arabidopsis thaliana | 3 | 3 | CH_ath_132 | 6 | 16 | 0.0000000289039 |
Arabidopsis thaliana | 5 | 3 | CH_ath_214 | 4 | 5 | 0.00000405121 |
Arabidopsis thaliana | 1 | 5 | CH_ath_11 | 12 | 16 | 4.36179e-25 |
Arabidopsis thaliana | 1 | 6 | CH_ath_11 | 12 | 16 | 4.36179e-25 |
Brassica rapa | A02 | 2 | CH_bra_27 | 6 | 7 | 0.0000000000256401 |
Brassica rapa | A05 | 2 | CH_bra_28 | 6 | 7 | 0.0000000000256401 |
Brassica rapa | A02 | 3 | CH_bra_36 | 6 | 7 | 0.0000000000256401 |
Brassica rapa | A05 | 3 | CH_bra_37 | 6 | 7 | 0.0000000000256401 |
Capsella rubella | scaffold_1 | 2 | CH_cru_287 | 3 | 3 | 0.000347011 |
Capsella rubella | scaffold_4 | 2 | CH_cru_46 | 6 | 6 | 0.00000000000396115 |
Capsella rubella | scaffold_5 | 2 | CH_cru_144 | 4 | 4 | 0.000000794621 |
Capsella rubella | scaffold_8 | 2 | CH_cru_288 | 3 | 3 | 0.000347011 |
Capsella rubella | scaffold_1 | 3 | CH_cru_328 | 3 | 3 | 0.000347011 |
Capsella rubella | scaffold_4 | 3 | CH_cru_52 | 6 | 6 | 0.00000000000396115 |
Capsella rubella | scaffold_8 | 3 | CH_cru_329 | 3 | 3 | 0.000347011 |
Carica papaya | supercontig_106 | 2 | CH_cpa_96 | 3 | 3 | 0.0000413544 |
Carica papaya | supercontig_131 | 2 | CH_cpa_195 | 3 | 5 | 0.000412781 |
Carica papaya | supercontig_106 | 3 | CH_cpa_165 | 3 | 3 | 0.0000413544 |
Carica papaya | supercontig_131 | 3 | CH_cpa_296 | 3 | 5 | 0.000412781 |
Citrus sinensis | scaffold00136 | 2 | CH_csi_21 | 6 | 8 | 0.00000000000132347 |
Citrus sinensis | scaffold00136 | 3 | CH_csi_29 | 6 | 8 | 0.00000000000132347 |
Eucalyptus grandis | scaffold_10 | 2 | CH_egr_179 | 9 | 46 | 0.000000000000144552 |
Eucalyptus grandis | scaffold_10 | 2 | CH_egr_324 | 6 | 20 | 0.00000000413547 |
Eucalyptus grandis | scaffold_10 | 3 | CH_egr_201 | 9 | 46 | 0.000000000000144552 |
Eucalyptus grandis | scaffold_10 | 5 | CH_egr_77 | 14 | 167 | 8.5577e-18 |
Eucalyptus grandis | scaffold_10 | 6 | CH_egr_92 | 14 | 167 | 8.5577e-18 |
Fragaria vesca | LG4 | 2 | CH_fve_127 | 4 | 8 | 0.0000018397 |
Fragaria vesca | LG4 | 3 | CH_fve_178 | 4 | 8 | 0.0000018397 |
Glycine max | Gm08 | 2 | CH_gma_51 | 7 | 15 | 0.00000000000189953 |
Glycine max | Gm13 | 2 | CH_gma_146 | 4 | 4 | 0.000000156343 |
Glycine max | Gm15 | 2 | CH_gma_50 | 6 | 7 | 0.0000000000017049 |
Glycine max | Gm08 | 3 | CH_gma_62 | 7 | 15 | 0.00000000000210072 |
Glycine max | Gm13 | 3 | CH_gma_175 | 4 | 4 | 0.000000165406 |
Glycine max | Gm15 | 3 | CH_gma_61 | 6 | 7 | 0.00000000000185754 |
Manihot esculenta | scaffold12525 | 2 | CH_mes_38 | 5 | 10 | 0.0000000100477 |
Manihot esculenta | scaffold12525 | 3 | CH_mes_52 | 5 | 10 | 0.0000000123289 |
Medicago truncatula | chr1 | 2 | CH_mtr_524 | 3 | 3 | 0.000120454 |
Medicago truncatula | chr8 | 2 | CH_mtr_24 | 13 | 52 | 2.42642e-22 |
Medicago truncatula | chr8 | 3 | CH_mtr_31 | 13 | 52 | 2.42642e-22 |
Populus trichocarpa | Chr19 | 2 | CH_ptr_125 | 5 | 7 | 0.00000000082301 |
Populus trichocarpa | Chr19 | 2 | CH_ptr_83 | 7 | 18 | 0.00000000000102306 |
Populus trichocarpa | Chr19 | 3 | CH_ptr_162 | 5 | 7 | 0.000000000931262 |
Populus trichocarpa | Chr19 | 3 | CH_ptr_99 | 7 | 18 | 0.00000000000122169 |
Populus trichocarpa | Chr19 | 5 | CH_ptr_40 | 12 | 170 | 0.00000000000000883845 |
Populus trichocarpa | Chr19 | 6 | CH_ptr_53 | 12 | 170 | 0.0000000000000122153 |
Prunus persica | scaffold_3 | 2 | CH_ppe_22 | 10 | 16 | 1.88755e-21 |
Prunus persica | scaffold_3 | 3 | CH_ppe_27 | 10 | 16 | 2.51624e-21 |
Prunus persica | scaffold_3 | 5 | CH_ppe_16 | 10 | 16 | 1.88755e-21 |
Prunus persica | scaffold_3 | 6 | CH_ppe_23 | 10 | 16 | 2.51624e-21 |
Ricinus communis | 30146 | 2 | CH_rco_5 | 9 | 11 | 2.10571e-21 |
Ricinus communis | 30146 | 3 | CH_rco_8 | 9 | 11 | 2.10571e-21 |
Thellungiella parvula | ch1-2 | 2 | CH_tpa_8 | 8 | 14 | 0.000000000000022839 |
Thellungiella parvula | ch4-6 | 2 | CH_tpa_92 | 4 | 6 | 0.00000767786 |
Thellungiella parvula | ch6-6 | 2 | CH_tpa_170 | 3 | 3 | 0.000248534 |
Thellungiella parvula | ch1-2 | 3 | CH_tpa_11 | 8 | 14 | 0.000000000000022839 |
Thellungiella parvula | ch4-6 | 3 | CH_tpa_109 | 4 | 6 | 0.00000767786 |
Thellungiella parvula | ch6-6 | 3 | CH_tpa_203 | 3 | 3 | 0.000248534 |
Theobroma cacao | scaffold_6 | 2 | CH_tca_66 | 6 | 19 | 0.000000000423188 |
Theobroma cacao | scaffold_6 | 3 | CH_tca_93 | 6 | 19 | 0.000000000423188 |
Vitis vinifera | chr9 | 2 | CH_vvi_17 | 14 | 33 | 2.4245e-27 |
Vitis vinifera | chr9 | 3 | CH_vvi_21 | 14 | 33 | 2.4245e-27 |
Vitis vinifera | chr9 | 5 | CH_vvi_17 | 14 | 33 | 2.4245e-27 |
Vitis vinifera | chr9 | 6 | CH_vvi_23 | 14 | 33 | 2.4245e-27 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:2000014 | regulation of endosperm development | 2 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |