PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	0033.scaffold00127	3	CH_bvu_61	6	7	0.000000000576659
Gossypium raimondii	Chr12	2	CH_gra_109	5	5	0.000000022835
Gossypium raimondii	Chr07	3	CH_gra_239	4	5	0.0000437714
Gossypium raimondii	Chr12	3	CH_gra_135	5	5	0.0000000337842
Prunus persica	scaffold_6	3	CH_ppe_481	4	9	0.000464112

GO term	Description	Number of clusters
GO:0009901	anther dehiscence	26
GO:0009910	negative regulation of flower development	3
GO:0009911	positive regulation of flower development	2
GO:0010080	regulation of floral meristem growth	1
GO:0048437	floral organ development	2
GO:0048439	flower morphogenesis	2
GO:0048446	petal morphogenesis	2
GO:0048448	stamen morphogenesis	2
GO:0048479	style development	2
GO:0048481	ovule development	2
GO:0048497	maintenance of floral organ identity	5
GO:0048657	anther wall tapetum cell differentiation	2
GO:0048658	anther wall tapetum development	4
GO:0060860	regulation of floral organ abscission	2
GO:0080187	floral organ senescence	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V