PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_6	2	CH_aly_102	5	8	0.000000106937
Arabidopsis lyrata	scaffold_6	3	CH_aly_120	5	8	0.000000106937
Arabidopsis thaliana	4	2	CH_ath_82	9	45	0.000000000495846
Arabidopsis thaliana	4	3	CH_ath_90	9	45	0.000000000495846
Arabidopsis thaliana	4	5	CH_ath_37	11	128	0.00000000874966
Arabidopsis thaliana	4	6	CH_ath_43	11	128	0.00000000874966
Beta vulgaris	Bvchr8.sca005	2	CH_bvu_139	4	6	0.0000127647
Beta vulgaris	Bvchr8.sca005	3	CH_bvu_177	4	6	0.0000137648
Brassica rapa	A08	2	CH_bra_246	4	9	0.000414352
Brassica rapa	A08	3	CH_bra_287	4	9	0.000414352
Capsella rubella	scaffold_6	2	CH_cru_40	7	8	0.00000000000108854
Capsella rubella	scaffold_6	3	CH_cru_45	7	8	0.00000000000108854
Citrus sinensis	scaffold00010	2	CH_csi_73	5	8	0.000000906098
Eucalyptus grandis	scaffold_6	3	CH_egr_421	9	74	0.0000000215528
Gossypium raimondii	Chr11	2	CH_gra_43	8	11	0.0000000000000379367
Gossypium raimondii	Chr11	3	CH_gra_60	8	11	0.0000000000000379367
Medicago truncatula	chr8	2	CH_mtr_172	7	25	0.00000000070148
Medicago truncatula	chr8	3	CH_mtr_209	7	25	0.00000000070148
Thellungiella parvula	ch6-1	2	CH_tpa_79	5	12	0.00000208739
Thellungiella parvula	ch6-1	3	CH_tpa_95	5	12	0.00000208739

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V