PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A06	5	CH_bra_5	11	15	0.0000000000000563544
Brassica rapa	A06	6	CH_bra_6	11	15	0.0000000000000865969
Fragaria vesca	LG3	3	CH_fve_295	4	4	0.000109091
Gossypium raimondii	Chr05	2	CH_gra_10	26	76	5.16799e-27
Gossypium raimondii	Chr05	3	CH_gra_15	26	76	7.00826e-27
Malus domestica	5	3	CH_mdo_188	4	4	0.0000453883
Ricinus communis	30146	5	CH_rco_14	10	23	0.0000000000563165
Thellungiella parvula	ch4-6	2	CH_tpa_101	6	10	0.0000200333
Thellungiella parvula	ch4-6	3	CH_tpa_120	6	10	0.000024554
Thellungiella parvula	ch1-2	5	CH_tpa_7	11	23	0.0000000000339182
Thellungiella parvula	ch1-2	6	CH_tpa_7	11	23	0.0000000000492979

GO term	Description	Number of clusters
GO:0010068	protoderm histogenesis	2
GO:0010071	root meristem specification	2
GO:0010072	primary shoot apical meristem specification	4

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V