PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0009791
Description: post-embryonic development

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00002	2	CH_atr_173	10	72	0.000102392
Amborella trichopoda	scaffold00002	3	CH_atr_262	10	72	0.000131411
Amborella trichopoda	scaffold00002	8	CH_atr_5	9	72	0.000337319
Amborella trichopoda	scaffold00002	9	CH_atr_12	9	72	0.000410898
Arabidopsis lyrata	scaffold_3	2	CH_aly_15	24	80	5.94522e-18
Arabidopsis lyrata	scaffold_3	2	CH_aly_206	12	61	0.000046958
Arabidopsis lyrata	scaffold_3	3	CH_aly_18	24	80	7.79409e-18
Arabidopsis lyrata	scaffold_3	3	CH_aly_242	12	61	0.0000534706
Capsella rubella	scaffold_3	6	CH_cru_80	27	298	0.0000400323

Available child term results

GO term	Description	Number of clusters
GO:0009704	de-etiolation	2
GO:0009793	embryo development ending in seed dormancy	11
GO:0009878	nodule morphogenesis	88
GO:0009886	post-embryonic morphogenesis	2
GO:0009901	anther dehiscence	26
GO:0009908	flower development	5
GO:0009910	negative regulation of flower development	3
GO:0009911	positive regulation of flower development	2
GO:0009960	endosperm development	70
GO:0010029	regulation of seed germination	2
GO:0010030	positive regulation of seed germination	2
GO:0010068	protoderm histogenesis	2
GO:0010071	root meristem specification	2
GO:0010072	primary shoot apical meristem specification	4
GO:0010080	regulation of floral meristem growth	1
GO:0010162	seed dormancy process	1
GO:0010214	seed coat development	1
GO:0010228	vegetative to reproductive phase transition of meristem	10
GO:0010231	maintenance of seed dormancy	6
GO:0010235	guard mother cell cytokinesis	2
GO:0010311	lateral root formation	17
GO:0010321	regulation of vegetative phase change	8
GO:0010431	seed maturation	22
GO:0010442	guard cell morphogenesis	5
GO:0048437	floral organ development	2
GO:0048439	flower morphogenesis	2
GO:0048446	petal morphogenesis	2
GO:0048448	stamen morphogenesis	2
GO:0048479	style development	2
GO:0048481	ovule development	2
GO:0048497	maintenance of floral organ identity	5
GO:0048573	photoperiodism, flowering	1
GO:0048578	positive regulation of long-day photoperiodism, flowering	2
GO:0048579	negative regulation of long-day photoperiodism, flowering	2
GO:0048580	regulation of post-embryonic development	4
GO:0048657	anther wall tapetum cell differentiation	2
GO:0048658	anther wall tapetum development	4
GO:0048700	acquisition of desiccation tolerance in seed	4
GO:0060860	regulation of floral organ abscission	2
GO:0080001	mucilage extrusion from seed coat	6
GO:0080112	seed growth	1
GO:0080113	regulation of seed growth	2
GO:0080181	lateral root branching	11
GO:0080187	floral organ senescence	2
GO:2000014	regulation of endosperm development	2
GO:2000122	negative regulation of stomatal complex development	1
GO:2000693	positive regulation of seed maturation	2

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V