PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0009765
Description: photosynthesis, light harvesting

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00045	1	CH_atr_60	4	4	0.00000000717691
Amborella trichopoda	scaffold00045	2	CH_atr_63	4	4	0.0000000259969
Amborella trichopoda	scaffold00045	3	CH_atr_102	4	4	0.0000000303297
Brassica rapa	A05	1	CH_bra_96	3	3	0.0000221022
Brassica rapa	A05	2	CH_bra_160	3	3	0.0000364923
Brassica rapa	A05	3	CH_bra_199	3	3	0.0000393733
Capsella rubella	scaffold_1	1	CH_cru_127	3	3	0.0000116221
Chlamydomonas reinhardtii	chromosome_6	1	CH_cre_43	5	49	0.000118155
Chlamydomonas reinhardtii	chromosome_6	2	CH_cre_53	5	49	0.00031365
Chlamydomonas reinhardtii	chromosome_6	3	CH_cre_84	5	49	0.00031365
Eucalyptus grandis	scaffold_4	1	CH_egr_248	4	4	0.00000000437729
Fragaria vesca	LG3	1	CH_fve_83	4	6	0.0000000374204
Fragaria vesca	LG3	2	CH_fve_98	4	6	0.000000057776
Fragaria vesca	LG3	3	CH_fve_26	6	8	0.0000000000000122364
Glycine max	Gm16	1	CH_gma_350	3	7	0.000655496
Medicago truncatula	chr5	1	CH_mtr_189	4	6	0.0000000194148
Medicago truncatula	chr6	1	CH_mtr_103	5	7	0.00000000000917298
Medicago truncatula	chr5	2	CH_mtr_237	4	6	0.0000000466925
Medicago truncatula	chr6	2	CH_mtr_129	5	7	0.0000000000280775
Medicago truncatula	chr5	3	CH_mtr_302	4	6	0.0000000531316
Medicago truncatula	chr6	3	CH_mtr_165	5	7	0.0000000000330904
Prunus persica	scaffold_3	1	CH_ppe_238	3	4	0.000030198
Prunus persica	scaffold_3	2	CH_ppe_268	3	4	0.0000414459
Prunus persica	scaffold_3	3	CH_ppe_326	3	4	0.0000414459
Solanum lycopersicum	ch03	1	CH_sly_140	4	4	0.0000000262783
Solanum lycopersicum	ch03	2	CH_sly_150	4	4	0.0000000573832
Solanum lycopersicum	ch03	3	CH_sly_199	4	4	0.0000000573832
Solanum tuberosum	chr02	1	CH_stu_121	7	22	0.00000000000695
Solanum tuberosum	chr03	1	CH_stu_29	10	11	3.11489e-25
Solanum tuberosum	chr03	2	CH_stu_32	10	11	2.53651e-24
Solanum tuberosum	chr03	3	CH_stu_47	10	11	2.53651e-24
Solanum tuberosum	chr03	4	CH_stu_28	10	11	3.11489e-25
Solanum tuberosum	chr03	5	CH_stu_32	10	11	2.53651e-24
Solanum tuberosum	chr03	6	CH_stu_48	10	11	2.53651e-24
Zea mays	3	1	CH_zma_53	4	5	0.0000000452966
Zea mays	3	2	CH_zma_61	4	5	0.000000125937
Zea mays	3	3	CH_zma_85	4	5	0.000000125937

Available child term results

GO term	Description	Number of clusters
GO:0009769	photosynthesis, light harvesting in photosystem II	20

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V