PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0009733
Description: response to auxin

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	3	CH_aly_197	7	12	0.00000638238
Arabidopsis lyrata	scaffold_6	3	CH_aly_236	6	9	0.000043698
Arabidopsis thaliana	1	1	CH_ath_84	8	12	0.0000000157068
Arabidopsis thaliana	3	1	CH_ath_341	5	8	0.00077535
Arabidopsis thaliana	4	1	CH_ath_66	7	7	0.00000000251721
Arabidopsis thaliana	5	1	CH_ath_197	6	9	0.000015425
Arabidopsis thaliana	5	1	CH_ath_251	6	11	0.0000829188
Arabidopsis thaliana	1	2	CH_ath_154	8	12	0.000000257838
Arabidopsis thaliana	4	2	CH_ath_120	7	7	0.0000000295777
Arabidopsis thaliana	5	2	CH_ath_301	6	9	0.000125365
Arabidopsis thaliana	5	2	CH_ath_412	6	11	0.000667366
Arabidopsis thaliana	1	3	CH_ath_166	8	12	0.000000261068
Arabidopsis thaliana	5	3	CH_ath_319	6	9	0.00012654
Beta vulgaris	Bvchr9.sca025	3	CH_bvu_56	7	7	0.000000000186315
Capsella rubella	scaffold_3	2	CH_cru_188	7	14	0.0000264935
Capsella rubella	scaffold_1	3	CH_cru_153	8	12	0.00000027994
Capsella rubella	scaffold_3	3	CH_cru_266	7	14	0.0000940057
Carica papaya	supercontig_20	3	CH_cpa_2	17	18	7.76538e-30
Carica papaya	supercontig_20	6	CH_cpa_2	17	18	7.76538e-30
Citrus sinensis	scaffold00023	3	CH_csi_6	12	12	4.35209e-20
Citrus sinensis	scaffold00023	6	CH_csi_5	12	12	4.35209e-20
Eucalyptus grandis	scaffold_7	3	CH_egr_182	10	13	0.0000000000000145432
Eucalyptus grandis	scaffold_9	3	CH_egr_135	10	10	5.19982e-17
Eucalyptus grandis	scaffold_7	6	CH_egr_117	10	13	0.0000000000000145432
Glycine max	Gm06	6	CH_gma_55	10	25	0.00000000985405
Gossypium raimondii	Chr02	3	CH_gra_441	4	4	0.000982919
Medicago truncatula	chr1	6	CH_mtr_170	10	81	0.00000509029
Oryza sativa ssp. japonica	9	3	CH_osa_4	18	22	6.20616e-34
Oryza sativa ssp. japonica	9	6	CH_osa_5	18	22	6.20616e-34
Populus trichocarpa	Chr09	3	CH_ptr_495	4	4	0.000362747
Populus trichocarpa	Chr17	3	CH_ptr_341	5	6	0.0000209138
Ricinus communis	29838	3	CH_rco_2	18	25	2.76915e-27
Ricinus communis	29863	3	CH_rco_142	5	5	0.00000172463
Ricinus communis	29838	6	CH_rco_2	18	25	2.76915e-27
Solanum lycopersicum	ch04	3	CH_sly_95	10	15	0.000000000000890352
Solanum lycopersicum	ch10	3	CH_sly_132	7	7	0.000000000330963
Solanum lycopersicum	ch10	3	CH_sly_363	5	6	0.0000202767
Solanum lycopersicum	ch11	3	CH_sly_48	11	11	3.01545e-18
Solanum lycopersicum	ch04	6	CH_sly_56	10	15	0.000000000000890352
Solanum lycopersicum	ch11	6	CH_sly_40	11	11	3.01545e-18
Solanum tuberosum	chr04	3	CH_stu_14	23	26	7.75418e-38
Solanum tuberosum	chr10	3	CH_stu_151	9	10	0.000000000000955031
Solanum tuberosum	chr10	3	CH_stu_119	10	11	0.0000000000000116046
Solanum tuberosum	chr11	3	CH_stu_5	27	29	1.55076e-46
Solanum tuberosum	chr12	3	CH_stu_527	5	6	0.0000375331
Solanum tuberosum	chr04	6	CH_stu_17	23	26	7.75418e-38
Solanum tuberosum	chr10	6	CH_stu_78	10	11	0.0000000000000116046
Solanum tuberosum	chr11	6	CH_stu_6	27	29	1.55076e-46
Thellungiella parvula	ch1-1	3	CH_tpa_123	6	10	0.0000268724
Theobroma cacao	scaffold_2	3	CH_tca_28	11	12	1.93198e-17
Theobroma cacao	scaffold_7	3	CH_tca_322	5	8	0.000129326
Vitis vinifera	chr3	3	CH_vvi_54	10	10	8.59305e-17
Zea mays	2	3	CH_zma_21	9	11	0.0000000000000889699
Zea mays	7	3	CH_zma_217	4	4	0.0000998462

Available child term results

GO term	Description	Number of clusters
GO:0009734	auxin mediated signaling pathway	14
GO:0071365	cellular response to auxin stimulus	3
GO:0080026	response to indolebutyric acid	2

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V