Functional clusters   top

Information

Type
GO term
Identifier
GO:0009617
Description
response to bacterium

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica rapaA092CH_bra_295560.000803897
Brassica rapaA093CH_bra_351560.000803897
Capsella rubellascaffold_15CH_cru_7110340.000177616
Capsella rubellascaffold_65CH_cru_65283000.0000709334
Capsella rubellascaffold_16CH_cru_9310340.000177616
Capsella rubellascaffold_66CH_cru_87283000.0000709334
Prunus persicascaffold_42CH_ppe_3026110.0000779592
Prunus persicascaffold_43CH_ppe_3676110.0000779592
Solanum lycopersicumch022CH_sly_1398140.0000000265346
Solanum lycopersicumch023CH_sly_1858140.0000000265346
Solanum tuberosumchr022CH_stu_2009180.0000000129567
Solanum tuberosumchr023CH_stu_2839180.0000000129567
Thellungiella parvulach1-12CH_tpa_169560.000245894
Thellungiella parvulach1-13CH_tpa_202560.000245894

Available child term results

GO term Description Number of clusters
GO:0009816defense response to bacterium, incompatible interaction20
GO:0009864induced systemic resistance, jasmonic acid mediated signaling pathway1
GO:0009866induced systemic resistance, ethylene mediated signaling pathway1
GO:0016045detection of bacterium2
GO:0042742defense response to bacterium22
GO:1900425negative regulation of defense response to bacterium25

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1GOPrimary GO data only.230800.001X
2GOPrimary and orthology projected GO data.230800.001X
3GOAll GO data.230800.001X
4GOPrimary GO data only.101503000.001X
5GOPrimary and orthology projected GO data.101503000.001X
6GOAll GO data.101503000.001X
7GOPrimary GO data only.230800.001V
8GOPrimary and orthology projected GO data.230800.001V
9GOAll GO data.230800.001V
10GOPrimary GO data only.101503000.001V
11GOPrimary and orthology projected GO data.101503000.001V
12GOAll GO data.101503000.001V
13InterProNo filter applied.230800.001X
14InterProNo filter applied.101503000.001X
15InterProNo filter applied.230800.001V
16InterProNo filter applied.101503000.001V
17MapManNo filter applied.230800.001X
18MapManNo filter applied.101503000.001X
19MapManNo filter applied.230800.001V
20MapManNo filter applied.101503000.001V