Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0009617
- Description
- response to bacterium
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Brassica rapa | A09 | 2 | CH_bra_295 | 5 | 6 | 0.000803897 |
Brassica rapa | A09 | 3 | CH_bra_351 | 5 | 6 | 0.000803897 |
Capsella rubella | scaffold_1 | 5 | CH_cru_71 | 10 | 34 | 0.000177616 |
Capsella rubella | scaffold_6 | 5 | CH_cru_65 | 28 | 300 | 0.0000709334 |
Capsella rubella | scaffold_1 | 6 | CH_cru_93 | 10 | 34 | 0.000177616 |
Capsella rubella | scaffold_6 | 6 | CH_cru_87 | 28 | 300 | 0.0000709334 |
Prunus persica | scaffold_4 | 2 | CH_ppe_302 | 6 | 11 | 0.0000779592 |
Prunus persica | scaffold_4 | 3 | CH_ppe_367 | 6 | 11 | 0.0000779592 |
Solanum lycopersicum | ch02 | 2 | CH_sly_139 | 8 | 14 | 0.0000000265346 |
Solanum lycopersicum | ch02 | 3 | CH_sly_185 | 8 | 14 | 0.0000000265346 |
Solanum tuberosum | chr02 | 2 | CH_stu_200 | 9 | 18 | 0.0000000129567 |
Solanum tuberosum | chr02 | 3 | CH_stu_283 | 9 | 18 | 0.0000000129567 |
Thellungiella parvula | ch1-1 | 2 | CH_tpa_169 | 5 | 6 | 0.000245894 |
Thellungiella parvula | ch1-1 | 3 | CH_tpa_202 | 5 | 6 | 0.000245894 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0009816 | defense response to bacterium, incompatible interaction | 20 |
GO:0009864 | induced systemic resistance, jasmonic acid mediated signaling pathway | 1 |
GO:0009866 | induced systemic resistance, ethylene mediated signaling pathway | 1 |
GO:0016045 | detection of bacterium | 2 |
GO:0042742 | defense response to bacterium | 22 |
GO:1900425 | negative regulation of defense response to bacterium | 25 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |