PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0009615
Description: response to virus

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_3	2	CH_aly_48	6	6	0.000000000111217
Arabidopsis lyrata	scaffold_4	2	CH_aly_11	10	10	2.17944e-20
Arabidopsis lyrata	scaffold_4	2	CH_aly_68	6	8	0.00000000309367
Arabidopsis lyrata	scaffold_5	2	CH_aly_1	20	29	6.19592e-38
Arabidopsis lyrata	scaffold_5	2	CH_aly_201	4	5	0.0000376732
Arabidopsis lyrata	scaffold_3	3	CH_aly_59	6	6	0.000000000111217
Arabidopsis lyrata	scaffold_4	3	CH_aly_12	10	10	2.17944e-20
Arabidopsis lyrata	scaffold_5	3	CH_aly_232	4	5	0.0000376732
Arabidopsis lyrata	scaffold_5	3	CH_aly_2	20	29	6.19592e-38
Arabidopsis lyrata	scaffold_4	5	CH_aly_10	10	10	2.17944e-20
Arabidopsis lyrata	scaffold_5	5	CH_aly_4	20	29	6.19592e-38
Arabidopsis lyrata	scaffold_4	6	CH_aly_9	10	10	2.17944e-20
Arabidopsis lyrata	scaffold_5	6	CH_aly_3	20	29	6.19592e-38
Arabidopsis thaliana	1	2	CH_ath_259	6	17	0.0000562788
Arabidopsis thaliana	2	2	CH_ath_294	4	4	0.0000941978
Arabidopsis thaliana	3	2	CH_ath_4	22	26	1.96267e-39
Arabidopsis thaliana	1	3	CH_ath_269	6	17	0.0000562788
Arabidopsis thaliana	2	3	CH_ath_309	4	4	0.0000941978
Arabidopsis thaliana	3	3	CH_ath_4	22	26	1.96267e-39
Arabidopsis thaliana	3	5	CH_ath_5	22	26	1.96267e-39
Arabidopsis thaliana	3	6	CH_ath_5	22	26	1.96267e-39
Brassica rapa	A03	2	CH_bra_124	4	4	0.00000916154
Brassica rapa	A04	2	CH_bra_122	4	4	0.00000916154
Brassica rapa	A04	2	CH_bra_123	4	4	0.00000916154
Brassica rapa	A04	2	CH_bra_36	6	7	0.000000000927298
Brassica rapa	A05	2	CH_bra_10	8	8	0.00000000000000187828
Brassica rapa	A07	2	CH_bra_109	5	9	0.00000435498
Brassica rapa	A09	2	CH_bra_35	6	7	0.000000000927298
Brassica rapa	A03	3	CH_bra_154	4	4	0.00000916154
Brassica rapa	A04	3	CH_bra_153	4	4	0.00000916154
Brassica rapa	A04	3	CH_bra_52	6	7	0.000000000927298
Brassica rapa	A04	3	CH_bra_152	4	4	0.00000916154
Brassica rapa	A05	3	CH_bra_10	8	8	0.00000000000000187828
Brassica rapa	A07	3	CH_bra_135	5	9	0.00000435498
Brassica rapa	A09	3	CH_bra_51	6	7	0.000000000927298
Brassica rapa	A05	5	CH_bra_10	11	86	0.0000000018034
Brassica rapa	A05	6	CH_bra_16	11	86	0.0000000018034
Capsella rubella	scaffold_3	2	CH_cru_77	6	7	0.000000000920811
Capsella rubella	scaffold_4	2	CH_cru_100	5	5	0.0000000326271
Capsella rubella	scaffold_5	2	CH_cru_3	15	18	2.00165e-29
Capsella rubella	scaffold_5	2	CH_cru_173	4	4	0.00000798938
Capsella rubella	scaffold_3	3	CH_cru_89	6	7	0.000000000920811
Capsella rubella	scaffold_4	3	CH_cru_118	5	5	0.0000000326271
Capsella rubella	scaffold_5	3	CH_cru_204	4	4	0.00000798938
Capsella rubella	scaffold_5	3	CH_cru_6	15	18	2.00165e-29
Capsella rubella	scaffold_5	5	CH_cru_3	15	18	2.00165e-29
Capsella rubella	scaffold_5	6	CH_cru_6	15	18	2.00165e-29
Glycine max	Gm14	2	CH_gma_443	3	3	0.0006846
Glycine max	Gm14	3	CH_gma_540	3	3	0.0006846
Oryza sativa ssp. japonica	11	2	CH_osa_358	3	4	0.000318017
Oryza sativa ssp. japonica	11	3	CH_osa_426	3	4	0.000333401
Populus trichocarpa	Chr09	2	CH_ptr_471	3	3	0.000993049
Populus trichocarpa	Chr13	2	CH_ptr_470	3	3	0.000993049
Populus trichocarpa	Chr09	3	CH_ptr_579	3	3	0.000993049
Populus trichocarpa	Chr13	3	CH_ptr_578	3	3	0.000993049
Ricinus communis	29854	2	CH_rco_185	3	3	0.000250187
Ricinus communis	29854	3	CH_rco_233	3	3	0.000250187
Solanum lycopersicum	ch09	3	CH_sly_562	3	3	0.000421293
Thellungiella parvula	ch5-1	2	CH_tpa_50	5	6	0.0000000488555
Thellungiella parvula	ch5-1	3	CH_tpa_59	5	6	0.0000000488555

Available child term results

GO term	Description	Number of clusters
GO:0002230	positive regulation of defense response to virus by host	23
GO:0009616	virus induced gene silencing	5
GO:0050688	regulation of defense response to virus	4
GO:0050691	regulation of defense response to virus by host	4
GO:0051607	defense response to virus	4
GO:0060154	cellular process regulating host cell cycle in response to virus	2

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V