PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Prunus persica	scaffold_1	3	CH_ppe_522	5	10	0.000766317
Prunus persica	scaffold_1	9	CH_ppe_6	5	10	0.000269643
Vitis vinifera	chr1	3	CH_vvi_479	5	10	0.000890792

GO term	Description	Number of clusters
GO:0000045	autophagic vacuole assembly	2
GO:0009432	SOS response	6
GO:0009583	detection of light stimulus	1
GO:0009584	detection of visible light	4
GO:0009585	red, far-red light phototransduction	1
GO:0009970	cellular response to sulfate starvation	12
GO:0010106	cellular response to iron ion starvation	14
GO:0010183	pollen tube guidance	9
GO:0010266	response to vitamin B1	5
GO:0010438	cellular response to sulfur starvation	6
GO:0016036	cellular response to phosphate starvation	6
GO:0016045	detection of bacterium	2
GO:0031667	response to nutrient levels	2
GO:0032109	positive regulation of response to nutrient levels	2
GO:0042631	cellular response to water deprivation	1
GO:0043481	anthocyanin accumulation in tissues in response to UV light	1
GO:0045014	negative regulation of transcription by glucose	2
GO:0050982	detection of mechanical stimulus	26
GO:0051365	cellular response to potassium ion starvation	2
GO:0072732	cellular response to calcium ion starvation	2
GO:0080029	cellular response to boron-containing substance levels	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V