PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr6.sca004	2	CH_bvu_161	3	3	0.0000363665
Beta vulgaris	Bvchr6.sca004	3	CH_bvu_197	3	3	0.0000363665
Eucalyptus grandis	scaffold_8	2	CH_egr_531	3	3	0.0000103642
Eucalyptus grandis	scaffold_8	3	CH_egr_599	3	3	0.0000103642
Medicago truncatula	chr8	2	CH_mtr_454	3	4	0.00003378
Medicago truncatula	chr8	3	CH_mtr_556	3	4	0.00003378
Solanum lycopersicum	ch05	2	CH_sly_58	6	6	0.000000000000018818
Solanum lycopersicum	ch05	3	CH_sly_73	6	6	0.000000000000018818
Solanum tuberosum	chr05	2	CH_stu_137	5	5	0.0000000000112299
Solanum tuberosum	chr05	3	CH_stu_180	5	5	0.0000000000112299
Zea mays	7	2	CH_zma_42	4	4	0.00000000669761
Zea mays	7	3	CH_zma_60	4	4	0.00000000669761

GO term	Description	Number of clusters
GO:0080155	regulation of double fertilization forming a zygote and endosperm	12
GO:0080173	male-female gamete recognition during double fertilization	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V