PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0009561
Description: megagametogenesis

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_3	2	CH_aly_161	7	24	0.000004281
Arabidopsis lyrata	scaffold_3	2	CH_aly_328	6	28	0.000722877
Arabidopsis lyrata	scaffold_3	2	CH_aly_210	4	4	0.0000539561
Arabidopsis lyrata	scaffold_3	2	CH_aly_120	10	64	0.000000365176
Arabidopsis lyrata	scaffold_3	2	CH_aly_32	14	75	0.00000000000180743
Arabidopsis lyrata	scaffold_3	2	CH_aly_211	4	4	0.0000539561
Arabidopsis lyrata	scaffold_4	2	CH_aly_267	4	5	0.000268402
Arabidopsis lyrata	scaffold_3	3	CH_aly_244	4	4	0.0000539561
Arabidopsis lyrata	scaffold_3	3	CH_aly_191	7	24	0.000004281
Arabidopsis lyrata	scaffold_3	3	CH_aly_43	14	75	0.00000000000180743
Arabidopsis lyrata	scaffold_3	3	CH_aly_243	4	4	0.0000539561
Arabidopsis lyrata	scaffold_3	3	CH_aly_143	10	64	0.000000365176
Arabidopsis lyrata	scaffold_3	3	CH_aly_384	6	28	0.000722877
Arabidopsis lyrata	scaffold_4	3	CH_aly_307	4	5	0.000268402
Arabidopsis lyrata	scaffold_3	5	CH_aly_19	19	254	0.000000000186111
Arabidopsis lyrata	scaffold_3	5	CH_aly_12	23	287	0.0000000000000595598
Arabidopsis lyrata	scaffold_3	6	CH_aly_14	23	287	0.0000000000000595598
Arabidopsis lyrata	scaffold_3	6	CH_aly_24	19	254	0.000000000186111
Brassica rapa	A03	5	CH_bra_9	17	247	0.0000000000780496
Brassica rapa	A03	6	CH_bra_12	17	247	0.0000000000780496
Capsella rubella	scaffold_3	2	CH_cru_130	9	27	0.000000226695
Capsella rubella	scaffold_4	2	CH_cru_202	8	33	0.0000584095
Capsella rubella	scaffold_3	3	CH_cru_149	9	27	0.000000226695
Capsella rubella	scaffold_4	3	CH_cru_237	8	33	0.0000584095
Capsella rubella	scaffold_6	5	CH_cru_60	18	264	0.000027729
Capsella rubella	scaffold_6	6	CH_cru_75	18	264	0.000027729
Gossypium raimondii	scaffold_15	2	CH_gra_173	6	25	0.000011775
Medicago truncatula	chr8	2	CH_mtr_462	3	4	0.0000438605
Medicago truncatula	chr8	3	CH_mtr_568	3	4	0.0000438605
Prunus persica	scaffold_7	2	CH_ppe_97	8	69	0.000000000459006
Prunus persica	scaffold_7	3	CH_ppe_114	8	69	0.000000000459006
Prunus persica	scaffold_7	5	CH_ppe_61	10	291	0.000000039793
Prunus persica	scaffold_7	6	CH_ppe_82	10	291	0.000000039793
Solanum lycopersicum	ch01	5	CH_sly_57	10	292	0.0000000258574
Thellungiella parvula	ch4-6	2	CH_tpa_86	4	5	0.00000392178
Theobroma cacao	scaffold_4	3	CH_tca_290	4	7	0.0000549964

Available child term results

GO term	Description	Number of clusters
GO:0010197	polar nucleus fusion	7

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V