PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Ricinus communis	29852	2	CH_rco_54	4	4	0.0000000137654
Ricinus communis	29852	3	CH_rco_84	4	4	0.0000000170043
Solanum lycopersicum	ch01	2	CH_sly_207	4	4	0.00000114732
Solanum lycopersicum	ch07	2	CH_sly_437	3	3	0.000487707
Solanum lycopersicum	ch09	2	CH_sly_264	4	6	0.0000171448
Solanum lycopersicum	ch12	2	CH_sly_45	9	12	1.4998e-17
Solanum lycopersicum	ch12	2	CH_sly_438	3	3	0.000487707
Solanum lycopersicum	ch01	3	CH_sly_267	4	4	0.00000120328
Solanum lycopersicum	ch07	3	CH_sly_579	3	3	0.000505335
Solanum lycopersicum	ch09	3	CH_sly_353	4	6	0.0000179803
Solanum lycopersicum	ch12	3	CH_sly_56	9	12	1.67497e-17
Solanum lycopersicum	ch12	3	CH_sly_580	3	3	0.000505335
Solanum lycopersicum	ch12	5	CH_sly_44	11	68	0.000000000000431912
Solanum lycopersicum	ch12	6	CH_sly_47	12	68	0.00000000000000517352
Solanum tuberosum	chr10	2	CH_stu_408	3	3	0.0000600009
Solanum tuberosum	chr10	3	CH_stu_563	3	3	0.0000643912

GO term	Description	Number of clusters
GO:0009538	photosystem I reaction center	3

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V