PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_4	3	CH_aly_348	16	55	0.000455747
Arabidopsis lyrata	scaffold_4	6	CH_aly_91	16	55	0.000455747
Arabidopsis thaliana	3	2	CH_ath_442	18	71	0.000984904
Arabidopsis thaliana	5	2	CH_ath_223	21	75	0.00000956513
Arabidopsis thaliana	3	3	CH_ath_468	18	71	0.000993184
Arabidopsis thaliana	5	3	CH_ath_235	21	75	0.00000966118
Arabidopsis thaliana	3	5	CH_ath_40	41	221	0.00000013928
Arabidopsis thaliana	3	6	CH_ath_51	41	221	0.000000141707
Carica papaya	supercontig_103	2	CH_cpa_219	10	34	0.000642367
Carica papaya	supercontig_103	3	CH_cpa_329	10	34	0.000652083
Carica papaya	supercontig_103	5	CH_cpa_23	10	34	0.000642367
Carica papaya	supercontig_103	6	CH_cpa_37	10	34	0.000652083
Citrullus lanatus	Chr2	6	CH_cla_58	26	207	0.000406788
Theobroma cacao	scaffold_5	2	CH_tca_365	6	8	0.00079679
Theobroma cacao	scaffold_5	3	CH_tca_446	6	8	0.000807013
Theobroma cacao	scaffold_9	11	CH_tca_6	18	157	0.00050865
Theobroma cacao	scaffold_9	12	CH_tca_4	18	157	0.00053275

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V