PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrullus lanatus	Chr11	3	CH_cla_42	11	17	0.000000000000180477
Citrullus lanatus	Chr11	6	CH_cla_14	11	17	0.000000000000180477
Cucumis melo	CM3.5_scaffold00051	3	CH_cme_177	5	6	0.0000166864
Medicago truncatula	chr1	2	CH_mtr_673	8	75	0.000708758
Medicago truncatula	chr1	3	CH_mtr_871	8	75	0.000891818
Medicago truncatula	chr6	3	CH_mtr_58	13	27	7.71117e-18
Medicago truncatula	chr1	5	CH_mtr_193	10	129	0.000237304
Medicago truncatula	chr8	5	CH_mtr_125	10	76	0.00000119843
Medicago truncatula	chr1	6	CH_mtr_246	10	129	0.000314712
Medicago truncatula	chr6	6	CH_mtr_55	13	27	7.71117e-18
Medicago truncatula	chr8	6	CH_mtr_147	10	76	0.00000160232
Solanum lycopersicum	ch01	5	CH_sly_89	17	277	0.0000462876
Solanum lycopersicum	ch01	6	CH_sly_129	17	277	0.0000531599

GO term	Description	Number of clusters
GO:0009269	response to desiccation	29
GO:0009819	drought recovery	10
GO:0042631	cellular response to water deprivation	1
GO:0080148	negative regulation of response to water deprivation	4

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V