PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_7	5	CH_aly_30	25	289	0.00000155096
Arabidopsis lyrata	scaffold_7	6	CH_aly_41	25	289	0.00000167579
Brassica rapa	A09	2	CH_bra_297	7	17	0.000820084
Brassica rapa	A09	3	CH_bra_355	7	17	0.000870111
Capsella rubella	scaffold_8	2	CH_cru_165	6	6	0.0000038347
Capsella rubella	scaffold_8	3	CH_cru_189	6	6	0.00000399027
Eucalyptus grandis	scaffold_5	5	CH_egr_162	21	232	0.0000000125438
Eucalyptus grandis	scaffold_5	6	CH_egr_192	21	232	0.0000000131773
Gossypium raimondii	Chr11	2	CH_gra_226	11	65	0.0000892657
Gossypium raimondii	Chr11	3	CH_gra_277	11	65	0.0000981707

GO term	Description	Number of clusters
GO:0009631	cold acclimation	6
GO:0010219	regulation of vernalization response	2
GO:0010220	positive regulation of vernalization response	2
GO:0050826	response to freezing	10

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V