PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_8	2	CH_aly_277	11	50	0.000370137
Arabidopsis lyrata	scaffold_8	3	CH_aly_349	11	50	0.000458197
Arabidopsis lyrata	scaffold_8	5	CH_aly_76	11	50	0.000370137
Arabidopsis lyrata	scaffold_8	6	CH_aly_92	11	50	0.000458197

GO term	Description	Number of clusters
GO:0009411	response to UV	2
GO:0009416	response to light stimulus	2
GO:0009583	detection of light stimulus	1
GO:0009584	detection of visible light	4
GO:0009585	red, far-red light phototransduction	1
GO:0009639	response to red or far red light	2
GO:0009644	response to high light intensity	2
GO:0009650	UV protection	4
GO:0009704	de-etiolation	2
GO:0009785	blue light signaling pathway	2
GO:0010017	red or far-red light signaling pathway	17
GO:0010018	far-red light signaling pathway	5
GO:0010165	response to X-ray	5
GO:0010203	response to very low fluence red light stimulus	4
GO:0010205	photoinhibition	2
GO:0010212	response to ionizing radiation	4
GO:0010224	response to UV-B	5
GO:0010244	response to low fluence blue light stimulus by blue low-fluence system	6
GO:0010332	response to gamma radiation	2
GO:0043481	anthocyanin accumulation in tissues in response to UV light	1
GO:0048573	photoperiodism, flowering	1
GO:0048578	positive regulation of long-day photoperiodism, flowering	2
GO:0048579	negative regulation of long-day photoperiodism, flowering	2
GO:0071482	cellular response to light stimulus	2
GO:0071490	cellular response to far red light	4
GO:0071492	cellular response to UV-A	13
GO:0071493	cellular response to UV-B	2
GO:2000030	regulation of response to red or far red light	4

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V