Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0009101
- Description
- glycoprotein biosynthetic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | scaffold00016 | 3 | CH_atr_142 | 4 | 5 | 0.000000608495 |
Arabidopsis lyrata | scaffold_7 | 3 | CH_aly_52 | 6 | 8 | 0.00000000000882052 |
Arabidopsis thaliana | 4 | 3 | CH_ath_75 | 5 | 5 | 0.000000000102242 |
Beta vulgaris | Bvchr4.sca012 | 3 | CH_bvu_207 | 3 | 3 | 0.0000511089 |
Beta vulgaris | Bvchr4.sca012 | 9 | CH_bvu_7 | 3 | 3 | 0.0000604732 |
Capsella rubella | scaffold_7 | 3 | CH_cru_144 | 4 | 4 | 0.000000149315 |
Citrus sinensis | scaffold00005 | 3 | CH_csi_259 | 3 | 5 | 0.000814889 |
Citrus sinensis | scaffold00005 | 9 | CH_csi_6 | 3 | 5 | 0.000316776 |
Fragaria vesca | LG2 | 3 | CH_fve_126 | 5 | 12 | 0.0000000499379 |
Oryza sativa ssp. japonica | 2 | 3 | CH_osa_239 | 4 | 8 | 0.00000685141 |
Oryza sativa ssp. japonica | 9 | 3 | CH_osa_156 | 4 | 4 | 0.0000000982315 |
Prunus persica | scaffold_1 | 3 | CH_ppe_260 | 4 | 7 | 0.00000289462 |
Thellungiella parvula | ch2-4 | 3 | CH_tpa_240 | 3 | 4 | 0.000574464 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0006471 | protein ADP-ribosylation | 9 |
GO:0006486 | protein glycosylation | 5 |
GO:0018279 | protein N-linked glycosylation via asparagine | 2 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |