PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00016	3	CH_atr_142	4	5	0.000000608495
Arabidopsis lyrata	scaffold_7	3	CH_aly_52	6	8	0.00000000000882052
Arabidopsis thaliana	4	3	CH_ath_75	5	5	0.000000000102242
Beta vulgaris	Bvchr4.sca012	3	CH_bvu_207	3	3	0.0000511089
Beta vulgaris	Bvchr4.sca012	9	CH_bvu_7	3	3	0.0000604732
Capsella rubella	scaffold_7	3	CH_cru_144	4	4	0.000000149315
Citrus sinensis	scaffold00005	3	CH_csi_259	3	5	0.000814889
Citrus sinensis	scaffold00005	9	CH_csi_6	3	5	0.000316776
Fragaria vesca	LG2	3	CH_fve_126	5	12	0.0000000499379
Oryza sativa ssp. japonica	2	3	CH_osa_239	4	8	0.00000685141
Oryza sativa ssp. japonica	9	3	CH_osa_156	4	4	0.0000000982315
Prunus persica	scaffold_1	3	CH_ppe_260	4	7	0.00000289462
Thellungiella parvula	ch2-4	3	CH_tpa_240	3	4	0.000574464

GO term	Description	Number of clusters
GO:0006471	protein ADP-ribosylation	9
GO:0006486	protein glycosylation	5
GO:0018279	protein N-linked glycosylation via asparagine	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V