PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0009055
Description: electron carrier activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00010	2	CH_atr_41	6	6	0.000000000309985
Amborella trichopoda	scaffold00004	3	CH_atr_191	6	17	0.00000835074
Amborella trichopoda	scaffold00010	3	CH_atr_73	6	6	0.000000000710215
Arabidopsis lyrata	scaffold_7	1	CH_aly_60	13	49	0.00000000732026
Arabidopsis lyrata	scaffold_7	2	CH_aly_77	13	49	0.00000000906431
Arabidopsis lyrata	scaffold_7	4	CH_aly_13	13	49	0.00000000732026
Arabidopsis lyrata	scaffold_7	5	CH_aly_22	13	49	0.00000000906431
Arabidopsis lyrata	scaffold_7	6	CH_aly_50	15	110	0.00000499244
Capsella rubella	scaffold_7	4	CH_cru_24	14	59	0.00000010931
Capsella rubella	scaffold_7	5	CH_cru_37	14	59	0.000000138807
Capsella rubella	scaffold_7	6	CH_cru_47	14	59	0.000000158197
Citrullus lanatus	Chr11	2	CH_cla_120	4	4	0.0000216759
Citrullus lanatus	Chr9	2	CH_cla_25	8	8	0.0000000000000176479
Citrullus lanatus	Chr11	3	CH_cla_158	4	4	0.0000259813
Citrullus lanatus	Chr9	3	CH_cla_33	8	8	0.0000000000000254982
Cucumis melo	CM3.5_scaffold00012	2	CH_cme_202	4	6	0.000272961
Cucumis melo	CM3.5_scaffold00060	2	CH_cme_80	5	5	0.0000000926997
Cucumis melo	CM3.5_scaffold00012	3	CH_cme_297	4	6	0.000334238
Cucumis melo	CM3.5_scaffold00060	3	CH_cme_117	5	5	0.000000119581
Eucalyptus grandis	scaffold_3	1	CH_egr_243	9	38	0.00000000297153
Eucalyptus grandis	scaffold_3	1	CH_egr_195	8	16	0.0000000000596343
Eucalyptus grandis	scaffold_6	1	CH_egr_430	4	4	0.0000134838
Eucalyptus grandis	scaffold_3	2	CH_egr_252	8	16	0.0000000000995744
Eucalyptus grandis	scaffold_3	2	CH_egr_335	9	38	0.00000000527213
Eucalyptus grandis	scaffold_3	3	CH_egr_307	8	16	0.000000000146708
Eucalyptus grandis	scaffold_3	3	CH_egr_398	9	38	0.00000000812978
Eucalyptus grandis	scaffold_3	4	CH_egr_155	12	144	0.0000000944248
Fragaria vesca	LG1	1	CH_fve_17	9	13	0.00000000000000939069
Fragaria vesca	LG7	1	CH_fve_42	7	11	0.000000000259466
Fragaria vesca	scf0513160	1	CH_fve_137	4	4	0.0000110654
Fragaria vesca	LG1	2	CH_fve_18	9	13	0.0000000000000136928
Fragaria vesca	LG7	2	CH_fve_53	7	11	0.000000000347152
Fragaria vesca	scf0513160	2	CH_fve_159	4	4	0.0000130502
Fragaria vesca	LG1	3	CH_fve_28	9	13	0.0000000000000234395
Fragaria vesca	LG7	3	CH_fve_78	8	17	0.000000000309642
Fragaria vesca	scf0513160	3	CH_fve_229	4	4	0.0000165135
Fragaria vesca	LG7	6	CH_fve_45	10	82	0.000000270024
Glycine max	Gm05	1	CH_gma_332	8	27	0.000467783
Glycine max	Gm09	1	CH_gma_186	6	7	0.00000721174
Glycine max	Gm11	1	CH_gma_349	8	28	0.000645437
Glycine max	Gm20	1	CH_gma_256	9	32	0.00009043
Glycine max	Gm05	2	CH_gma_419	8	27	0.00051906
Glycine max	Gm09	2	CH_gma_231	6	7	0.00000781685
Glycine max	Gm11	2	CH_gma_449	8	28	0.000716044
Glycine max	Gm20	2	CH_gma_304	9	32	0.000101624
Glycine max	Gm05	3	CH_gma_530	8	27	0.000594952
Glycine max	Gm09	3	CH_gma_293	6	7	0.0000086889
Glycine max	Gm11	3	CH_gma_566	8	28	0.00082052
Glycine max	Gm11	4	CH_gma_77	15	140	0.000670658
Glycine max	Gm11	5	CH_gma_94	15	140	0.000800286
Gossypium raimondii	Chr04	1	CH_gra_272	6	11	0.000796438
Gossypium raimondii	Chr08	1	CH_gra_198	5	5	0.0000978794
Gossypium raimondii	Chr04	2	CH_gra_362	6	11	0.00087134
Gossypium raimondii	Chr08	2	CH_gra_231	5	5	0.000105599
Gossypium raimondii	Chr04	3	CH_gra_430	6	11	0.000936882
Gossypium raimondii	Chr08	3	CH_gra_283	5	5	0.000112271
Lotus japonicus	chr1	2	CH_lja_22	5	5	0.00000000796314
Lotus japonicus	chr4	2	CH_lja_36	6	18	0.000000424184
Lotus japonicus	chr1	3	CH_lja_32	5	5	0.0000000109589
Lotus japonicus	chr4	3	CH_lja_55	6	18	0.000000622271
Malus domestica	2	2	CH_mdo_8	9	23	0.00000000000633459
Malus domestica	2	3	CH_mdo_10	10	23	0.000000000000102911
Malus domestica	2	5	CH_mdo_27	10	158	0.0000366869
Malus domestica	2	6	CH_mdo_8	10	23	0.000000000000102911
Manihot esculenta	scaffold02431	2	CH_mes_148	4	5	0.000154226
Manihot esculenta	scaffold02431	3	CH_mes_199	4	5	0.000207139
Medicago truncatula	chr6	1	CH_mtr_441	4	6	0.000131967
Medicago truncatula	chr4	2	CH_mtr_397	4	4	0.0000101883
Medicago truncatula	chr6	2	CH_mtr_535	4	6	0.000151965
Medicago truncatula	chr7	2	CH_mtr_97	9	19	0.000000000000456989
Medicago truncatula	chr6	3	CH_mtr_873	4	6	0.000906366
Oryza sativa ssp. japonica	3	1	CH_osa_274	4	5	0.000061049
Oryza sativa ssp. japonica	3	2	CH_osa_278	4	5	0.0000681316
Oryza sativa ssp. japonica	8	2	CH_osa_170	5	7	0.00000111433
Oryza sativa ssp. japonica	3	3	CH_osa_149	5	5	0.0000000680946
Oryza sativa ssp. japonica	8	3	CH_osa_201	5	7	0.00000142021
Populus trichocarpa	Chr02	1	CH_ptr_193	6	6	0.00000176662
Populus trichocarpa	Chr02	2	CH_ptr_218	6	6	0.00000191184
Populus trichocarpa	Chr02	3	CH_ptr_284	6	6	0.00000221524
Populus trichocarpa	Chr01	4	CH_ptr_106	10	44	0.000298064
Populus trichocarpa	Chr01	6	CH_ptr_140	10	44	0.000425322
Prunus persica	scaffold_2	1	CH_ppe_123	8	11	0.0000000444782
Prunus persica	scaffold_2	2	CH_ppe_144	8	11	0.0000000489549
Prunus persica	scaffold_2	3	CH_ppe_175	8	11	0.0000000521536
Solanum lycopersicum	ch07	2	CH_sly_329	4	4	0.0000857592
Solanum lycopersicum	ch07	3	CH_sly_455	4	4	0.000128279
Solanum tuberosum	chr01	2	CH_stu_528	4	5	0.000352853
Solanum tuberosum	chr01	2	CH_stu_501	7	40	0.000315044
Solanum tuberosum	chr01	2	CH_stu_190	6	6	0.00000000310829
Solanum tuberosum	chr07	2	CH_stu_257	5	5	0.00000047061
Solanum tuberosum	chr01	3	CH_stu_722	4	5	0.000511973
Solanum tuberosum	chr01	3	CH_stu_271	6	6	0.00000000544928
Solanum tuberosum	chr01	3	CH_stu_723	4	5	0.000511973
Solanum tuberosum	chr07	3	CH_stu_377	5	5	0.000000750633
Theobroma cacao	scaffold_2	1	CH_tca_133	6	6	0.000000580715
Theobroma cacao	scaffold_2	2	CH_tca_143	6	6	0.000000633134
Theobroma cacao	scaffold_2	3	CH_tca_190	6	6	0.000000689439
Vitis vinifera	chr11	1	CH_vvi_197	4	4	0.0000159014
Vitis vinifera	chr11	2	CH_vvi_227	4	4	0.0000195676
Vitis vinifera	chr11	3	CH_vvi_305	4	4	0.0000265651
Zea mays	7	2	CH_zma_191	5	12	0.000197099
Zea mays	7	3	CH_zma_157	6	15	0.0000110288

Available child term results

GO term	Description	Number of clusters
GO:0045153	electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	2

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V