PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr2_un.sca002	1	CH_bvu_175	6	22	0.000214394
Beta vulgaris	Bvchr2_un.sca002	2	CH_bvu_255	6	22	0.000336047
Beta vulgaris	Bvchr2_un.sca002	3	CH_bvu_346	6	22	0.000582208
Medicago truncatula	chr1	6	CH_mtr_272	10	194	0.000790942
Solanum tuberosum	chr01	5	CH_stu_126	10	92	0.0000102036

GO term	Description	Number of clusters
GO:0000162	tryptophan biosynthetic process	1
GO:0006529	asparagine biosynthetic process	4
GO:0006535	cysteine biosynthetic process from serine	12
GO:0006542	glutamine biosynthetic process	8
GO:0006556	S-adenosylmethionine biosynthetic process	3
GO:0006571	tyrosine biosynthetic process	9
GO:0008612	peptidyl-lysine modification to hypusine	3
GO:0009067	aspartate family amino acid biosynthetic process	1
GO:0009098	leucine biosynthetic process	1
GO:0019281	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine	1
GO:0019509	L-methionine salvage from methylthioadenosine	14
GO:0042450	arginine biosynthetic process via ornithine	1
GO:0046901	tetrahydrofolylpolyglutamate biosynthetic process	4
GO:0071266	'de novo' L-methionine biosynthetic process	9
GO:1901607	alpha-amino acid biosynthetic process	11

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V