PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Solanum tuberosum	chr12	2	CH_stu_332	3	4	0.00000884617
Solanum tuberosum	chr12	3	CH_stu_464	3	4	0.00000884617

GO term	Description	Number of clusters
GO:0010026	trichome differentiation	1
GO:0010053	root epidermal cell differentiation	2
GO:0010054	trichoblast differentiation	15
GO:0010090	trichome morphogenesis	2
GO:0010235	guard mother cell cytokinesis	2
GO:0010442	guard cell morphogenesis	5
GO:0045604	regulation of epidermal cell differentiation	2
GO:0045682	regulation of epidermis development	3
GO:0048730	epidermis morphogenesis	1
GO:0048766	root hair initiation	4
GO:0048767	root hair elongation	8
GO:0080147	root hair cell development	2
GO:1900033	negative regulation of trichome patterning	1
GO:2000122	negative regulation of stomatal complex development	1

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V