PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A05	1	CH_bra_185	3	4	0.00077311
Citrullus lanatus	Chr2	3	CH_cla_212	3	3	0.0000916736
Eucalyptus grandis	scaffold_1	1	CH_egr_415	4	12	0.00000927104
Glycine max	Gm07	1	CH_gma_348	3	5	0.000632651
Gossypium raimondii	Chr05	3	CH_gra_285	3	3	0.000118699
Populus trichocarpa	Chr17	1	CH_ptr_84	5	5	0.0000000000345802
Prunus persica	scaffold_8	1	CH_ppe_185	4	8	0.00000214915
Prunus persica	scaffold_8	2	CH_ppe_230	4	8	0.00000793169
Prunus persica	scaffold_8	3	CH_ppe_183	5	10	0.0000000868226
Thellungiella parvula	ch7-4	1	CH_tpa_95	3	3	0.0000799176
Theobroma cacao	scaffold_2	1	CH_tca_314	3	7	0.000987735

GO term	Description	Number of clusters
GO:0004021	L-alanine:2-oxoglutarate aminotransferase activity	7
GO:0004084	branched-chain-amino-acid transaminase activity	67
GO:0004360	glutamine-fructose-6-phosphate transaminase (isomerizing) activity	7
GO:0004400	histidinol-phosphate transaminase activity	8
GO:0004648	O-phospho-L-serine:2-oxoglutarate aminotransferase activity	1
GO:0004838	L-tyrosine:2-oxoglutarate aminotransferase activity	3
GO:0008793	aromatic-amino-acid:2-oxoglutarate aminotransferase activity	2
GO:0010285	L,L-diaminopimelate aminotransferase activity	2
GO:0010326	methionine-oxo-acid transaminase activity	2
GO:0033853	aspartate-prephenate aminotransferase activity	4
GO:0033855	nicotianamine aminotransferase activity	7
GO:0034387	4-aminobutyrate:pyruvate transaminase activity	2
GO:0052654	L-leucine transaminase activity	3
GO:0080099	L-methionine:2-oxoglutarate aminotransferase activity	6

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V