Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0008299
- Description
- isoprenoid biosynthetic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_3 | 1 | CH_aly_218 | 3 | 5 | 0.000589719 |
Arabidopsis thaliana | 3 | 1 | CH_ath_162 | 6 | 9 | 0.00000277528 |
Citrullus lanatus | Chr10 | 1 | CH_cla_193 | 3 | 5 | 0.000591716 |
Citrus sinensis | scaffold00197 | 1 | CH_csi_48 | 4 | 4 | 0.0000000818017 |
Citrus sinensis | scaffold00197 | 2 | CH_csi_88 | 4 | 4 | 0.00000598003 |
Citrus sinensis | scaffold00197 | 3 | CH_csi_109 | 4 | 4 | 0.0000063077 |
Gossypium raimondii | Chr11 | 1 | CH_gra_278 | 3 | 4 | 0.000896208 |
Solanum lycopersicum | ch10 | 1 | CH_sly_418 | 3 | 4 | 0.0006413 |
Solanum tuberosum | chr02 | 1 | CH_stu_350 | 3 | 3 | 0.0000480357 |
Thellungiella parvula | ch3-1 | 1 | CH_tpa_87 | 3 | 3 | 0.0000620034 |
Theobroma cacao | scaffold_4 | 1 | CH_tca_290 | 3 | 5 | 0.000586995 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0010263 | tricyclic triterpenoid biosynthetic process | 5 |
GO:0010322 | regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2 |
GO:0010371 | regulation of gibberellin biosynthetic process | 2 |
GO:0010373 | negative regulation of gibberellin biosynthetic process | 2 |
GO:0010686 | tetracyclic triterpenoid biosynthetic process | 12 |
GO:0016099 | monoterpenoid biosynthetic process | 2 |
GO:0016114 | terpenoid biosynthetic process | 2 |
GO:0016117 | carotenoid biosynthetic process | 3 |
GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 9 |
GO:0019408 | dolichol biosynthetic process | 10 |
GO:0019745 | pentacyclic triterpenoid biosynthetic process | 8 |
GO:0043693 | monoterpene biosynthetic process | 2 |
GO:0045337 | farnesyl diphosphate biosynthetic process | 6 |
GO:0046246 | terpene biosynthetic process | 4 |
GO:0051762 | sesquiterpene biosynthetic process | 2 |
GO:0090359 | negative regulation of abscisic acid biosynthetic process | 6 |
GO:1901601 | strigolactone biosynthetic process | 2 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |