PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0008270
Description: zinc ion binding

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00020	1	CH_atr_133	7	10	0.0000280558
Amborella trichopoda	scaffold00040	1	CH_atr_191	5	5	0.000352064
Amborella trichopoda	scaffold00086	1	CH_atr_118	6	6	0.00000940656
Amborella trichopoda	scaffold00020	2	CH_atr_144	7	10	0.0000569543
Amborella trichopoda	scaffold00040	2	CH_atr_225	5	5	0.000586628
Amborella trichopoda	scaffold00086	2	CH_atr_129	6	6	0.0000173663
Amborella trichopoda	scaffold00009	3	CH_atr_87	9	9	0.00000000487378
Amborella trichopoda	scaffold00055	3	CH_atr_259	7	9	0.000110401
Amborella trichopoda	scaffold00086	3	CH_atr_255	6	6	0.0000851457
Amborella trichopoda	scaffold00009	6	CH_atr_46	15	36	0.0000000402216
Amborella trichopoda	scaffold00020	6	CH_atr_65	10	21	0.0000447209
Amborella trichopoda	scaffold00055	6	CH_atr_85	14	56	0.000513145
Arabidopsis lyrata	scaffold_5	1	CH_aly_75	13	24	0.0000000989815
Arabidopsis lyrata	scaffold_5	2	CH_aly_113	13	24	0.000000218843
Arabidopsis lyrata	scaffold_3	3	CH_aly_311	9	15	0.000317104
Arabidopsis lyrata	scaffold_5	3	CH_aly_151	13	24	0.000000866956
Arabidopsis lyrata	scaffold_5	4	CH_aly_17	13	24	0.0000000989815
Arabidopsis lyrata	scaffold_5	5	CH_aly_25	13	24	0.000000218843
Arabidopsis lyrata	scaffold_5	6	CH_aly_38	13	24	0.000000866956
Arabidopsis thaliana	3	1	CH_ath_156	10	16	0.00000183457
Arabidopsis thaliana	5	1	CH_ath_243	9	16	0.0000649365
Arabidopsis thaliana	3	2	CH_ath_188	10	16	0.0000021262
Arabidopsis thaliana	5	2	CH_ath_288	9	16	0.0000740899
Arabidopsis thaliana	3	3	CH_ath_152	11	16	0.000000131695
Arabidopsis thaliana	3	4	CH_ath_40	10	16	0.00000183457
Arabidopsis thaliana	3	5	CH_ath_55	10	16	0.0000021262
Arabidopsis thaliana	3	6	CH_ath_49	11	16	0.000000131695
Capsella rubella	scaffold_5	3	CH_cru_262	14	36	0.0000897223
Capsella rubella	scaffold_5	6	CH_cru_90	14	36	0.0000897223
Carica papaya	supercontig_81	1	CH_cpa_117	6	6	0.000104963
Carica papaya	supercontig_81	2	CH_cpa_157	6	6	0.000165096
Carica papaya	supercontig_235	3	CH_cpa_60	12	16	0.0000000357432
Carica papaya	supercontig_81	3	CH_cpa_332	6	6	0.000718674
Carica papaya	supercontig_235	6	CH_cpa_18	12	16	0.0000000357432
Citrullus lanatus	Chr3	1	CH_cla_202	5	5	0.00076823
Eucalyptus grandis	scaffold_7	1	CH_egr_565	7	11	0.000308567
Eucalyptus grandis	scaffold_8	1	CH_egr_129	12	12	0.0000000000000313713
Eucalyptus grandis	scaffold_7	2	CH_egr_755	7	11	0.000539244
Eucalyptus grandis	scaffold_8	2	CH_egr_174	12	12	0.000000000000083216
Eucalyptus grandis	scaffold_10	3	CH_egr_882	6	7	0.000999919
Eucalyptus grandis	scaffold_3	3	CH_egr_881	6	7	0.000999919
Eucalyptus grandis	scaffold_8	4	CH_egr_99	12	12	0.0000000000000313713
Eucalyptus grandis	scaffold_9	4	CH_egr_170	10	17	0.000000510444
Eucalyptus grandis	scaffold_8	5	CH_egr_107	12	12	0.000000000000083216
Eucalyptus grandis	scaffold_9	5	CH_egr_203	10	17	0.00000113014
Eucalyptus grandis	scaffold_9	6	CH_egr_244	10	17	0.0000058041
Fragaria vesca	LG1	1	CH_fve_246	6	7	0.00051858
Fragaria vesca	LG5	1	CH_fve_119	16	55	0.0000022222
Fragaria vesca	LG1	2	CH_fve_337	6	7	0.000762765
Fragaria vesca	LG5	2	CH_fve_93	18	55	0.0000000435135
Fragaria vesca	LG5	3	CH_fve_146	12	18	0.000000135518
Fragaria vesca	LG1	4	CH_fve_46	10	21	0.0000319452
Fragaria vesca	LG5	4	CH_fve_39	16	55	0.0000022222
Fragaria vesca	LG1	5	CH_fve_47	10	21	0.000059543
Fragaria vesca	LG5	5	CH_fve_22	18	55	0.0000000435135
Fragaria vesca	LG1	6	CH_fve_78	11	21	0.0000421941
Fragaria vesca	LG5	6	CH_fve_42	12	18	0.000000135518
Glycine max	Gm12	1	CH_gma_290	6	6	0.000256313
Glycine max	Gm12	2	CH_gma_407	6	6	0.000395407
Gossypium raimondii	Chr03	1	CH_gra_163	8	10	0.0000181253
Gossypium raimondii	Chr03	2	CH_gra_192	8	10	0.0000333847
Gossypium raimondii	Chr03	3	CH_gra_177	9	10	0.0000019413
Lotus japonicus	chr2	5	CH_lja_22	10	40	0.000575204
Lotus japonicus	chr2	6	CH_lja_30	11	40	0.00042154
Medicago truncatula	chr3	1	CH_mtr_392	7	12	0.0000406803
Medicago truncatula	chr8	1	CH_mtr_433	8	20	0.000108105
Medicago truncatula	chr8	1	CH_mtr_391	7	12	0.0000406803
Medicago truncatula	chr3	2	CH_mtr_472	7	12	0.0000666043
Medicago truncatula	chr8	2	CH_mtr_471	7	12	0.0000666043
Medicago truncatula	chr2	3	CH_mtr_455	14	51	0.00000532447
Medicago truncatula	chr3	3	CH_mtr_714	8	16	0.000249661
Medicago truncatula	chr4	3	CH_mtr_401	8	10	0.00000101422
Medicago truncatula	chr7	3	CH_mtr_799	14	70	0.000484961
Medicago truncatula	chr8	3	CH_mtr_817	7	12	0.000596555
Medicago truncatula	chr3	4	CH_mtr_196	12	73	0.000831064
Medicago truncatula	chr2	6	CH_mtr_171	14	51	0.00000532447
Medicago truncatula	chr7	6	CH_mtr_262	14	70	0.000484961
Oryza sativa ssp. japonica	10	1	CH_osa_359	14	33	0.00046337
Oryza sativa ssp. japonica	3	1	CH_osa_209	14	26	0.00000854297
Oryza sativa ssp. japonica	5	1	CH_osa_70	27	62	0.0000000000258682
Oryza sativa ssp. japonica	5	1	CH_osa_179	24	73	0.0000015148
Oryza sativa ssp. japonica	6	1	CH_osa_354	21	73	0.000397925
Oryza sativa ssp. japonica	10	2	CH_osa_398	14	33	0.000625396
Oryza sativa ssp. japonica	3	2	CH_osa_212	14	26	0.0000116572
Oryza sativa ssp. japonica	5	2	CH_osa_74	27	62	0.0000000000461954
Oryza sativa ssp. japonica	5	2	CH_osa_180	24	73	0.00000246426
Oryza sativa ssp. japonica	6	2	CH_osa_394	21	73	0.000600514
Oryza sativa ssp. japonica	3	3	CH_osa_273	14	26	0.0000263965
Oryza sativa ssp. japonica	5	3	CH_osa_196	25	73	0.00000133252
Oryza sativa ssp. japonica	5	3	CH_osa_96	27	62	0.000000000211625
Oryza sativa ssp. japonica	3	4	CH_osa_101	14	26	0.00000854297
Oryza sativa ssp. japonica	4	4	CH_osa_105	49	272	0.0000116926
Oryza sativa ssp. japonica	5	4	CH_osa_17	76	298	7.1431e-20
Oryza sativa ssp. japonica	3	5	CH_osa_110	14	26	0.0000116572
Oryza sativa ssp. japonica	4	5	CH_osa_126	49	272	0.0000257779
Oryza sativa ssp. japonica	5	5	CH_osa_18	77	298	6.20056e-20
Oryza sativa ssp. japonica	3	6	CH_osa_133	14	26	0.0000263965
Oryza sativa ssp. japonica	4	6	CH_osa_169	51	296	0.000456277
Oryza sativa ssp. japonica	5	6	CH_osa_28	78	298	6.02255e-19
Oryza sativa ssp. japonica	10	7	CH_osa_38	14	33	0.000202979
Oryza sativa ssp. japonica	3	7	CH_osa_22	14	26	0.00000604623
Oryza sativa ssp. japonica	5	7	CH_osa_8	27	62	0.00000000000172582
Oryza sativa ssp. japonica	5	7	CH_osa_17	24	73	0.000000325918
Oryza sativa ssp. japonica	6	7	CH_osa_31	21	73	0.0000820779
Oryza sativa ssp. japonica	10	8	CH_osa_38	14	33	0.00027623
Oryza sativa ssp. japonica	3	8	CH_osa_19	14	26	0.00000830563
Oryza sativa ssp. japonica	5	8	CH_osa_6	27	62	0.00000000000314283
Oryza sativa ssp. japonica	5	8	CH_osa_13	24	73	0.000000539015
Oryza sativa ssp. japonica	6	8	CH_osa_33	21	73	0.000125936
Oryza sativa ssp. japonica	10	9	CH_osa_51	14	33	0.000538878
Oryza sativa ssp. japonica	3	9	CH_osa_22	14	26	0.0000165507
Oryza sativa ssp. japonica	5	9	CH_osa_6	27	62	0.0000000000115351
Oryza sativa ssp. japonica	5	9	CH_osa_13	25	73	0.000000220011
Oryza sativa ssp. japonica	6	9	CH_osa_43	21	73	0.0003176
Oryza sativa ssp. japonica	3	10	CH_osa_26	14	26	0.00000604623
Oryza sativa ssp. japonica	4	10	CH_osa_25	48	272	0.00000580715
Oryza sativa ssp. japonica	5	10	CH_osa_4	76	298	1.02178e-21
Oryza sativa ssp. japonica	6	10	CH_osa_41	27	115	0.0000691406
Oryza sativa ssp. japonica	3	11	CH_osa_38	14	26	0.00000830563
Oryza sativa ssp. japonica	4	11	CH_osa_42	48	272	0.0000129599
Oryza sativa ssp. japonica	5	11	CH_osa_4	77	298	8.6848e-22
Oryza sativa ssp. japonica	3	12	CH_osa_43	14	26	0.0000165507
Oryza sativa ssp. japonica	4	12	CH_osa_57	48	272	0.0000720302
Oryza sativa ssp. japonica	5	12	CH_osa_4	78	298	4.54663e-21
Prunus persica	scaffold_3	1	CH_ppe_126	23	76	0.0000000534724
Prunus persica	scaffold_5	1	CH_ppe_177	8	8	0.00000123183
Prunus persica	scaffold_5	1	CH_ppe_108	11	13	0.0000000113327
Prunus persica	scaffold_6	1	CH_ppe_25	24	39	2.55817e-17
Prunus persica	scaffold_3	2	CH_ppe_160	23	76	0.000000166605
Prunus persica	scaffold_5	2	CH_ppe_210	8	8	0.00000192614
Prunus persica	scaffold_5	2	CH_ppe_133	11	13	0.0000000208499
Prunus persica	scaffold_5	3	CH_ppe_196	11	13	0.000000183153
Prunus persica	scaffold_5	3	CH_ppe_284	8	8	0.00000949838
Prunus persica	scaffold_3	4	CH_ppe_61	24	83	0.0000000534656
Prunus persica	scaffold_5	4	CH_ppe_55	11	13	0.0000000113327
Prunus persica	scaffold_6	4	CH_ppe_20	24	39	2.55817e-17
Prunus persica	scaffold_3	5	CH_ppe_70	23	76	0.000000166605
Prunus persica	scaffold_5	5	CH_ppe_57	11	13	0.0000000208499
Prunus persica	scaffold_5	6	CH_ppe_89	11	13	0.000000183153
Solanum lycopersicum	ch03	1	CH_sly_274	10	20	0.0000566563
Solanum lycopersicum	ch03	2	CH_sly_330	10	20	0.0000922158
Solanum lycopersicum	ch01	3	CH_sly_198	11	13	0.0000000539078
Solanum lycopersicum	ch09	3	CH_sly_373	8	9	0.0000350511
Solanum lycopersicum	ch03	4	CH_sly_83	10	20	0.0000566563
Solanum lycopersicum	ch03	5	CH_sly_94	10	20	0.0000922158
Solanum lycopersicum	ch01	6	CH_sly_80	11	13	0.0000000539078
Solanum lycopersicum	ch03	6	CH_sly_161	29	154	0.00050423
Solanum lycopersicum	ch12	6	CH_sly_135	10	16	0.0000782048
Solanum tuberosum	chr03	1	CH_stu_280	7	7	0.00000301271
Solanum tuberosum	chr11	1	CH_stu_153	11	13	0.000000000381995
Solanum tuberosum	chr03	2	CH_stu_316	7	7	0.00000489561
Solanum tuberosum	chr02	3	CH_stu_719	6	6	0.000493425
Solanum tuberosum	chr03	3	CH_stu_512	7	7	0.0000241901
Solanum tuberosum	chr07	3	CH_stu_720	6	6	0.000493425
Solanum tuberosum	chr11	4	CH_stu_80	11	13	0.000000000381995
Solanum tuberosum	chr11	5	CH_stu_83	11	13	0.000000000816086
Solanum tuberosum	chr05	6	CH_stu_124	10	11	0.0000000298588
Theobroma cacao	scaffold_1	2	CH_tca_366	7	10	0.000805768
Theobroma cacao	scaffold_3	3	CH_tca_281	7	7	0.0000406666
Vitis vinifera	chrUn	1	CH_vvi_289	6	8	0.000522231
Vitis vinifera	chr3	3	CH_vvi_265	7	7	0.0000061777
Zea mays	10	1	CH_zma_113	8	12	0.0000154838
Zea mays	2	1	CH_zma_199	7	11	0.000333177
Zea mays	5	1	CH_zma_129	6	6	0.0000362923
Zea mays	9	1	CH_zma_91	9	15	0.00000458185
Zea mays	10	2	CH_zma_129	8	12	0.0000306496
Zea mays	2	2	CH_zma_230	7	11	0.000604738
Zea mays	5	2	CH_zma_152	6	6	0.0000610107
Zea mays	9	2	CH_zma_113	9	15	0.00000984075
Zea mays	10	3	CH_zma_252	8	12	0.000219286
Zea mays	2	3	CH_zma_180	15	47	0.0000301337
Zea mays	5	3	CH_zma_255	6	6	0.000273833
Zea mays	9	3	CH_zma_121	10	15	0.0000024065
Zea mays	2	6	CH_zma_31	15	47	0.0000301337
Zea mays	9	6	CH_zma_28	10	15	0.0000024065

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V