PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_7	2	CH_aly_129	7	40	0.000000696812
Arabidopsis lyrata	scaffold_7	3	CH_aly_152	7	40	0.000000947834
Arabidopsis lyrata	scaffold_4	4	CH_aly_20	10	178	0.00000147793
Arabidopsis lyrata	scaffold_4	5	CH_aly_36	10	178	0.00000332584
Arabidopsis lyrata	scaffold_4	6	CH_aly_51	10	178	0.00000512914
Arabidopsis thaliana	2	2	CH_ath_281	6	38	0.0000612497
Arabidopsis thaliana	4	2	CH_ath_192	7	44	0.00000242175
Arabidopsis thaliana	2	3	CH_ath_303	6	38	0.0000816361
Arabidopsis thaliana	4	3	CH_ath_209	7	44	0.00000339168
Arabidopsis thaliana	2	5	CH_ath_29	13	159	0.0000000000898216
Arabidopsis thaliana	2	6	CH_ath_34	13	159	0.000000000169349
Ricinus communis	30099	4	CH_rco_18	10	99	0.00000000402986
Ricinus communis	30099	5	CH_rco_20	10	99	0.00000000967582
Ricinus communis	30099	6	CH_rco_29	10	99	0.0000000184781

GO term	Description	Number of clusters
GO:0004181	metallocarboxypeptidase activity	5
GO:0004185	serine-type carboxypeptidase activity	229
GO:0008235	metalloexopeptidase activity	6
GO:0008239	dipeptidyl-peptidase activity	6
GO:0008240	tripeptidyl-peptidase activity	2
GO:0008242	omega peptidase activity	14
GO:0034722	gamma-glutamyl-peptidase activity	12
GO:0036374	glutathione hydrolase activity	1
GO:0070008	serine-type exopeptidase activity	3

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V