PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0008236
Description: serine-type peptidase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00089	4	CH_atr_28	11	74	0.000000199074
Amborella trichopoda	scaffold00089	5	CH_atr_29	11	74	0.000000223338
Arabidopsis lyrata	scaffold_6	1	CH_aly_212	7	42	0.000523361
Arabidopsis lyrata	scaffold_6	2	CH_aly_305	7	42	0.000539798
Arabidopsis lyrata	scaffold_6	3	CH_aly_390	7	42	0.000796711
Arabidopsis lyrata	scaffold_6	3	CH_aly_310	5	11	0.000310331
Brassica rapa	A02	4	CH_bra_16	10	132	0.000273707
Brassica rapa	A02	5	CH_bra_33	10	132	0.000284926
Brassica rapa	A02	6	CH_bra_47	10	132	0.000569837
Citrullus lanatus	Chr7	1	CH_cla_168	5	14	0.000303499
Citrullus lanatus	Chr7	2	CH_cla_208	5	14	0.000314638
Cucumis melo	CM3.5_scaffold00033	1	CH_cme_109	5	10	0.0000375091
Cucumis melo	CM3.5_scaffold00033	2	CH_cme_132	5	10	0.0000401003
Cucumis melo	CM3.5_scaffold00029	3	CH_cme_250	5	11	0.000110597
Eucalyptus grandis	scaffold_10	1	CH_egr_94	14	35	1.21079e-16
Eucalyptus grandis	scaffold_6	1	CH_egr_443	5	7	0.0000182932
Eucalyptus grandis	scaffold_10	2	CH_egr_126	14	35	1.27785e-16
Eucalyptus grandis	scaffold_6	2	CH_egr_541	5	7	0.0000186454
Eucalyptus grandis	scaffold_10	3	CH_egr_143	14	35	2.05663e-16
Eucalyptus grandis	scaffold_6	3	CH_egr_620	5	7	0.000022066
Eucalyptus grandis	scaffold_10	4	CH_egr_78	14	35	1.21079e-16
Eucalyptus grandis	scaffold_10	5	CH_egr_85	14	35	1.27785e-16
Eucalyptus grandis	scaffold_10	6	CH_egr_99	14	35	2.05663e-16
Fragaria vesca	LG2	1	CH_fve_122	5	7	0.00000307332
Fragaria vesca	LG2	2	CH_fve_136	5	7	0.00000324858
Fragaria vesca	LG2	3	CH_fve_200	5	7	0.00000548098
Fragaria vesca	LG2	4	CH_fve_34	10	81	0.000000763025
Fragaria vesca	LG2	5	CH_fve_33	10	81	0.000000850752
Fragaria vesca	LG2	6	CH_fve_56	10	81	0.00000236752
Glycine max	Gm01	1	CH_gma_331	5	11	0.000453319
Glycine max	Gm01	2	CH_gma_415	5	11	0.000477058
Glycine max	Gm01	3	CH_gma_533	5	11	0.000618482
Malus domestica	15	4	CH_mdo_35	10	172	0.000415855
Malus domestica	15	5	CH_mdo_47	10	172	0.000435917
Malus domestica	10	6	CH_mdo_67	10	159	0.00096934
Manihot esculenta	scaffold05859	1	CH_mes_128	4	5	0.000238194
Manihot esculenta	scaffold05859	2	CH_mes_157	4	5	0.000244801
Manihot esculenta	scaffold05859	3	CH_mes_242	4	5	0.000326895
Medicago truncatula	chr1	1	CH_mtr_555	4	7	0.00066965
Medicago truncatula	chr8	1	CH_mtr_554	4	7	0.00066965
Medicago truncatula	chr1	2	CH_mtr_675	4	7	0.000710042
Medicago truncatula	chr8	2	CH_mtr_674	4	7	0.000710042
Medicago truncatula	chr8	3	CH_mtr_446	5	7	0.00000375041
Populus trichocarpa	Chr01	1	CH_ptr_95	7	8	0.000000000169518
Populus trichocarpa	Chr01	2	CH_ptr_116	7	8	0.000000000174061
Populus trichocarpa	Chr01	3	CH_ptr_142	7	8	0.000000000255831
Prunus persica	scaffold_1	1	CH_ppe_224	5	8	0.000017573
Prunus persica	scaffold_1	2	CH_ppe_246	5	8	0.000018065
Prunus persica	scaffold_1	3	CH_ppe_305	5	8	0.000021253
Prunus persica	scaffold_1	4	CH_ppe_86	12	166	0.0000307644
Prunus persica	scaffold_1	5	CH_ppe_94	12	166	0.0000327546
Prunus persica	scaffold_1	6	CH_ppe_129	12	166	0.0000473364
Ricinus communis	29589	1	CH_rco_42	7	10	0.00000000405116
Ricinus communis	29589	2	CH_rco_46	7	10	0.00000000423357
Ricinus communis	29589	3	CH_rco_71	7	10	0.00000000703486
Solanum lycopersicum	ch01	1	CH_sly_20	15	24	6.07721e-23
Solanum lycopersicum	ch01	2	CH_sly_20	15	24	6.93687e-23
Solanum lycopersicum	ch01	3	CH_sly_23	16	24	7.82822e-25
Solanum lycopersicum	ch01	4	CH_sly_19	15	24	6.07721e-23
Solanum lycopersicum	ch04	4	CH_sly_65	14	192	0.00000179476
Solanum lycopersicum	ch01	5	CH_sly_19	15	24	6.93687e-23
Solanum lycopersicum	ch04	5	CH_sly_70	14	192	0.00000201167
Solanum lycopersicum	ch01	6	CH_sly_23	16	24	7.82822e-25
Solanum lycopersicum	ch04	6	CH_sly_86	15	192	0.000000412994
Solanum tuberosum	chr01	1	CH_stu_21	17	24	5.71383e-27
Solanum tuberosum	chr01	2	CH_stu_19	17	24	6.51653e-27
Solanum tuberosum	chr01	3	CH_stu_35	18	24	1.15219e-28
Solanum tuberosum	chr01	4	CH_stu_20	17	24	5.71383e-27
Solanum tuberosum	chr01	5	CH_stu_19	17	24	6.51653e-27
Solanum tuberosum	chr01	6	CH_stu_36	18	24	1.15219e-28
Thellungiella parvula	ch6-6	4	CH_tpa_11	13	206	0.0000282221
Thellungiella parvula	ch6-6	5	CH_tpa_23	13	206	0.000030402
Theobroma cacao	scaffold_9	1	CH_tca_180	5	7	0.00000676399
Theobroma cacao	scaffold_9	2	CH_tca_191	5	7	0.00000694445
Theobroma cacao	scaffold_9	3	CH_tca_246	5	7	0.00000790537
Vitis vinifera	chr6	1	CH_vvi_96	7	9	0.00000000242562
Vitis vinifera	chr6	2	CH_vvi_103	7	9	0.00000000250406
Vitis vinifera	chr6	3	CH_vvi_134	7	9	0.00000000611548
Zea mays	9	1	CH_zma_183	4	5	0.000170723
Zea mays	9	2	CH_zma_188	4	5	0.00017391
Zea mays	9	3	CH_zma_256	4	5	0.000278136

Available child term results

GO term	Description	Number of clusters
GO:0004185	serine-type carboxypeptidase activity	229
GO:0004252	serine-type endopeptidase activity	132
GO:0008240	tripeptidyl-peptidase activity	2
GO:0070008	serine-type exopeptidase activity	3

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V