PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0008104
Description: protein localization

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_15	3	CH_cpa_172	4	5	0.000055833
Citrullus lanatus	Chr1	3	CH_cla_216	4	5	0.0000982587
Citrullus lanatus	Chr3	3	CH_cla_262	4	6	0.000293519
Citrus sinensis	scaffold00006	3	CH_csi_131	4	4	0.0000322235
Cucumis melo	CM3.5_scaffold00007	3	CH_cme_178	4	4	0.0000172796
Cucumis melo	CM3.5_scaffold00012	3	CH_cme_106	6	10	0.0000000352141
Lotus japonicus	chr2	3	CH_lja_210	3	3	0.000718584
Manihot esculenta	scaffold03235	3	CH_mes_81	5	5	0.000000348166
Solanum tuberosum	chr11	3	CH_stu_325	5	5	0.0000000626285
Zea mays	6	3	CH_zma_80	5	5	0.0000000964226

Available child term results

GO term	Description	Number of clusters
GO:0006605	protein targeting	1
GO:0006606	protein import into nucleus	2
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	2
GO:0006620	posttranslational protein targeting to membrane	4
GO:0006621	protein retention in ER lumen	14
GO:0006623	protein targeting to vacuole	2
GO:0006625	protein targeting to peroxisome	2
GO:0006627	protein processing involved in protein targeting to mitochondrion	3
GO:0006886	intracellular protein transport	4
GO:0009306	protein secretion	2
GO:0015031	protein transport	3
GO:0016558	protein import into peroxisome matrix	1
GO:0017038	protein import	1
GO:0031204	posttranslational protein targeting to membrane, translocation	4
GO:0034394	protein localization to cell surface	10
GO:0034504	protein localization to nucleus	7
GO:0034613	cellular protein localization	4
GO:0042306	regulation of protein import into nucleus	42
GO:0044744	protein targeting to nucleus	2
GO:0045037	protein import into chloroplast stroma	3
GO:0045039	protein import into mitochondrial inner membrane	5
GO:0045040	protein import into mitochondrial outer membrane	9
GO:0045053	protein retention in Golgi apparatus	2
GO:0046827	positive regulation of protein export from nucleus	1
GO:0050708	regulation of protein secretion	2
GO:0051205	protein insertion into membrane	3
GO:0070585	protein localization to mitochondrion	1
GO:0072657	protein localization to membrane	6
GO:0072660	maintenance of protein location in plasma membrane	8
GO:0072665	protein localization to vacuole	2
GO:0090435	protein localization to nuclear envelope	2
GO:1901703	protein localization involved in auxin polar transport	6
GO:2000008	regulation of protein localization to cell surface	7

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V