PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_10	1	CH_egr_562	3	5	0.000305985
Eucalyptus grandis	scaffold_10	2	CH_egr_778	3	5	0.000828664
Eucalyptus grandis	scaffold_10	3	CH_egr_865	3	5	0.000828664
Fragaria vesca	LG6	3	CH_fve_196	5	18	0.0000044309
Solanum tuberosum	chr12	1	CH_stu_238	4	6	0.000000434177
Solanum tuberosum	chr12	2	CH_stu_289	4	6	0.00000190838

GO term	Description	Number of clusters
GO:0004112	cyclic-nucleotide phosphodiesterase activity	17
GO:0004113	2',3'-cyclic-nucleotide 3'-phosphodiesterase activity	3
GO:0004114	3',5'-cyclic-nucleotide phosphodiesterase activity	3
GO:0004435	phosphatidylinositol phospholipase C activity	93
GO:0004629	phospholipase C activity	3
GO:0004630	phospholipase D activity	1
GO:0004767	sphingomyelin phosphodiesterase activity	3
GO:0008889	glycerophosphodiester phosphodiesterase activity	10

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V