PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0008080
Description: N-acetyltransferase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	1	CH_ath_336	3	4	0.000655069
Arabidopsis thaliana	2	2	CH_ath_416	3	4	0.000726454
Brassica rapa	A01	1	CH_bra_184	3	4	0.00077311
Brassica rapa	A01	7	CH_bra_4	3	4	0.000611983
Brassica rapa	A01	8	CH_bra_5	3	4	0.000971683
Carica papaya	supercontig_89	3	CH_cpa_18	8	11	0.00000000000000437325
Chlamydomonas reinhardtii	chromosome_5	1	CH_cre_25	4	4	0.00000170528
Chlamydomonas reinhardtii	chromosome_5	2	CH_cre_26	4	4	0.00000210515
Chlamydomonas reinhardtii	chromosome_5	3	CH_cre_16	8	16	0.00000000000531997
Cucumis melo	CM3.5_scaffold00016	1	CH_cme_137	3	3	0.0000936942
Eucalyptus grandis	scaffold_8	1	CH_egr_372	4	6	0.00000133474
Eucalyptus grandis	scaffold_8	2	CH_egr_494	4	6	0.00000305383
Eucalyptus grandis	scaffold_8	3	CH_egr_592	4	6	0.00000773573
Malus domestica	13	1	CH_mdo_141	3	3	0.000074869
Malus domestica	13	2	CH_mdo_177	3	3	0.000126916
Malus domestica	13	3	CH_mdo_272	3	3	0.000243137
Medicago truncatula	chr5	1	CH_mtr_153	5	7	0.00000000181353
Medicago truncatula	chr7	1	CH_mtr_492	3	4	0.000322505
Medicago truncatula	chr5	2	CH_mtr_191	5	7	0.00000000356789
Medicago truncatula	chr7	2	CH_mtr_636	3	4	0.000481375
Medicago truncatula	chr5	3	CH_mtr_724	3	3	0.000272362
Medicago truncatula	chr5	3	CH_mtr_275	5	7	0.000000014103
Oryza sativa ssp. japonica	3	1	CH_osa_261	3	3	0.0000473712
Oryza sativa ssp. japonica	3	2	CH_osa_275	3	3	0.0000589294
Oryza sativa ssp. japonica	3	3	CH_osa_335	3	3	0.0000795707
Populus trichocarpa	Chr01	1	CH_ptr_311	6	80	0.000291113
Populus trichocarpa	Chr01	2	CH_ptr_422	6	80	0.000642215
Populus trichocarpa	Chr08	3	CH_ptr_525	3	3	0.000601598
Prunus persica	scaffold_1	1	CH_ppe_263	3	3	0.000110606
Prunus persica	scaffold_1	2	CH_ppe_317	3	3	0.000182598
Prunus persica	scaffold_1	3	CH_ppe_432	3	3	0.000266733
Ricinus communis	29844	1	CH_rco_31	5	5	0.0000000000994109
Ricinus communis	29844	2	CH_rco_38	5	5	0.000000000262986
Ricinus communis	29844	3	CH_rco_38	6	6	0.00000000000252237
Solanum lycopersicum	ch08	1	CH_sly_70	7	10	0.00000000000054667
Solanum lycopersicum	ch09	1	CH_sly_110	5	5	0.00000000122089
Solanum lycopersicum	ch09	2	CH_sly_110	5	5	0.00000000150168
Solanum lycopersicum	ch09	3	CH_sly_154	5	5	0.00000000422435
Solanum lycopersicum	ch08	4	CH_sly_53	10	132	0.00000000755432
Solanum tuberosum	chr08	1	CH_stu_72	8	13	0.00000000000000508991
Solanum tuberosum	chr09	1	CH_stu_68	7	7	0.00000000000000233287
Solanum tuberosum	chr09	2	CH_stu_75	7	7	0.00000000000000645101
Solanum tuberosum	chr09	3	CH_stu_121	7	7	0.0000000000000200423
Solanum tuberosum	chr08	4	CH_stu_59	10	51	0.000000000000125512
Thellungiella parvula	ch4-6	1	CH_tpa_110	3	3	0.000197283
Thellungiella parvula	ch7-6	1	CH_tpa_77	4	8	0.0000261798
Thellungiella parvula	ch4-6	2	CH_tpa_173	3	3	0.000307971
Thellungiella parvula	ch4-6	3	CH_tpa_215	3	3	0.000474769
Thellungiella parvula	ch7-6	7	CH_tpa_2	4	8	0.0000213602
Thellungiella parvula	ch7-6	8	CH_tpa_2	4	8	0.0000413506
Thellungiella parvula	ch7-6	9	CH_tpa_3	4	8	0.000059468
Theobroma cacao	scaffold_4	1	CH_tca_230	3	3	0.000092326
Theobroma cacao	scaffold_4	2	CH_tca_265	3	3	0.000145174
Theobroma cacao	scaffold_4	3	CH_tca_365	3	3	0.000215102
Vitis vinifera	chr5	3	CH_vvi_410	3	3	0.000336958
Zea mays	1	1	CH_zma_165	3	3	0.000123338
Zea mays	1	2	CH_zma_190	3	3	0.00018175
Zea mays	1	3	CH_zma_258	3	3	0.000288631

Available child term results

GO term	Description	Number of clusters
GO:0004042	acetyl-CoA:L-glutamate N-acetyltransferase activity	11
GO:0004358	glutamate N-acetyltransferase activity	3
GO:0004402	histone acetyltransferase activity	11
GO:0010484	H3 histone acetyltransferase activity	4
GO:0046027	phospholipid:diacylglycerol acyltransferase activity	2

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V