PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0008061
Description: chitin binding

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00001	3	CH_atr_28	7	12	9.7732e-17
Arabidopsis lyrata	scaffold_4	3	CH_aly_13	8	12	7.84933e-20
Arabidopsis thaliana	2	1	CH_ath_16	6	6	5.04884e-17
Arabidopsis thaliana	2	2	CH_ath_27	6	6	5.04884e-17
Arabidopsis thaliana	2	3	CH_ath_35	6	6	4.56161e-16
Beta vulgaris	Bvchr8.sca015	1	CH_bvu_17	6	8	0.00000000000000907431
Beta vulgaris	Bvchr6.sca005	2	CH_bvu_163	4	18	0.0000396798
Beta vulgaris	Bvchr6.sca005	3	CH_bvu_209	4	18	0.000059844
Brassica rapa	A03	1	CH_bra_4	6	6	1.83708e-16
Brassica rapa	A03	2	CH_bra_9	6	6	5.05196e-16
Brassica rapa	A03	3	CH_bra_13	6	6	0.00000000000000402038
Capsella rubella	scaffold_4	1	CH_cru_5	9	10	3.27084e-26
Capsella rubella	scaffold_4	2	CH_cru_7	9	10	7.94238e-25
Capsella rubella	scaffold_4	3	CH_cru_12	9	10	1.3347e-23
Citrullus lanatus	Chr1	3	CH_cla_21	6	6	1.72536e-16
Citrus sinensis	scaffold00023	3	CH_csi_85	4	17	0.000000774081
Cucumis melo	CM3.5_scaffold00007	3	CH_cme_26	6	6	1.01504e-16
Eucalyptus grandis	scaffold_8	3	CH_egr_43	10	10	7.38141e-27
Eucalyptus grandis	scaffold_9	3	CH_egr_335	6	19	0.000000000553871
Eucalyptus grandis	scaffold_8	6	CH_egr_42	10	10	7.38141e-27
Gossypium raimondii	Chr11	1	CH_gra_145	3	4	0.00000376744
Gossypium raimondii	Chr07	2	CH_gra_223	3	6	0.0000829
Gossypium raimondii	Chr11	2	CH_gra_182	3	4	0.0000165915
Gossypium raimondii	Chr05	3	CH_gra_211	3	3	0.000012525
Gossypium raimondii	Chr06	3	CH_gra_140	4	5	0.0000000401332
Gossypium raimondii	Chr07	3	CH_gra_337	3	6	0.00025012
Gossypium raimondii	Chr11	3	CH_gra_242	3	4	0.0000500748
Malus domestica	2	3	CH_mdo_141	3	4	0.00000365548
Manihot esculenta	scaffold03802	2	CH_mes_47	3	4	0.0000000540505
Manihot esculenta	scaffold03802	3	CH_mes_114	3	4	0.00000453927
Medicago truncatula	chr8	1	CH_mtr_248	3	4	0.000000197638
Medicago truncatula	chr8	2	CH_mtr_367	3	4	0.00000383938
Medicago truncatula	chr2	3	CH_mtr_484	3	4	0.00000999865
Medicago truncatula	chr8	3	CH_mtr_483	3	4	0.00000999865
Oryza sativa ssp. japonica	5	1	CH_osa_161	3	3	0.00000042016
Oryza sativa ssp. japonica	5	2	CH_osa_165	3	3	0.000000695174
Oryza sativa ssp. japonica	4	3	CH_osa_374	3	7	0.00013513
Oryza sativa ssp. japonica	5	3	CH_osa_227	3	3	0.00000386547
Populus trichocarpa	Chr19	1	CH_ptr_71	5	5	0.000000000000536562
Populus trichocarpa	Chr13	2	CH_ptr_280	3	4	0.0000386752
Populus trichocarpa	Chr19	2	CH_ptr_91	5	5	0.00000000000303535
Populus trichocarpa	Chr09	3	CH_ptr_78	6	7	0.0000000000000355161
Populus trichocarpa	Chr13	3	CH_ptr_391	3	4	0.0000668572
Populus trichocarpa	Chr19	3	CH_ptr_112	5	5	0.00000000000784036
Prunus persica	scaffold_1	3	CH_ppe_198	5	29	0.000000203995
Solanum lycopersicum	ch03	1	CH_sly_338	3	6	0.000174656
Solanum lycopersicum	ch07	1	CH_sly_263	3	4	0.0000349633
Solanum lycopersicum	ch03	2	CH_sly_396	3	6	0.000322975
Solanum lycopersicum	ch07	2	CH_sly_317	3	4	0.0000646683
Solanum lycopersicum	ch03	3	CH_sly_644	3	6	0.000900359
Solanum lycopersicum	ch07	7	CH_sly_4	3	4	0.00000084691
Solanum lycopersicum	ch07	8	CH_sly_4	3	4	0.00000203249
Solanum lycopersicum	ch07	9	CH_sly_8	3	4	0.00000691948
Solanum tuberosum	chr03	1	CH_stu_44	7	7	4.60325e-21
Solanum tuberosum	chr03	2	CH_stu_45	7	7	8.53693e-20
Solanum tuberosum	chr03	3	CH_stu_77	7	7	1.2895e-18
Theobroma cacao	scaffold_4	3	CH_tca_137	4	6	0.0000000259306
Vitis vinifera	chr5	3	CH_vvi_25	9	13	5.04358e-23
Vitis vinifera	chr5	6	CH_vvi_54	10	204	0.00000000000059654
Zea mays	2	3	CH_zma_54	4	4	0.00000000279163

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V