PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

No results found

GO term	Description	Number of clusters
GO:0000012	single strand break repair	2
GO:0000077	DNA damage checkpoint	2
GO:0000724	double-strand break repair via homologous recombination	9
GO:0006281	DNA repair	5
GO:0006282	regulation of DNA repair	5
GO:0006284	base-excision repair	8
GO:0006294	nucleotide-excision repair, preincision complex assembly	2
GO:0006298	mismatch repair	7
GO:0006302	double-strand break repair	1
GO:0006303	double-strand break repair via nonhomologous end joining	12
GO:0043247	telomere maintenance in response to DNA damage	8
GO:0045739	positive regulation of DNA repair	2
GO:0051103	DNA ligation involved in DNA repair	11

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V