PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0006952
Description: defense response

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00044	1	CH_atr_74	6	14	0.000000110451
Amborella trichopoda	scaffold00085	1	CH_atr_67	6	11	0.0000000171369
Amborella trichopoda	scaffold00044	3	CH_atr_180	8	14	0.00000495207
Arabidopsis lyrata	scaffold_8	1	CH_aly_1	27	42	5.2761e-40
Arabidopsis lyrata	scaffold_2	2	CH_aly_76	9	10	0.00000000868666
Arabidopsis lyrata	scaffold_2	3	CH_aly_113	9	10	0.0000000618486
Arabidopsis lyrata	scaffold_1	4	CH_aly_39	12	132	0.000250027
Arabidopsis lyrata	scaffold_8	4	CH_aly_1	44	111	6.19344e-55
Arabidopsis lyrata	scaffold_2	5	CH_aly_58	10	26	0.0000933214
Arabidopsis lyrata	scaffold_2	6	CH_aly_99	10	26	0.000743684
Arabidopsis thaliana	5	1	CH_ath_342	15	51	0.000797465
Arabidopsis thaliana	5	1	CH_ath_106	19	50	0.0000000638709
Arabidopsis thaliana	1	2	CH_ath_415	7	8	0.000688871
Arabidopsis thaliana	4	2	CH_ath_380	18	62	0.000436054
Arabidopsis thaliana	5	2	CH_ath_134	20	50	0.0000000865742
Arabidopsis thaliana	1	3	CH_ath_440	7	8	0.000761073
Arabidopsis thaliana	4	3	CH_ath_416	18	62	0.000544016
Arabidopsis thaliana	1	4	CH_ath_27	11	14	0.0000000674755
Arabidopsis thaliana	5	4	CH_ath_11	55	291	0.00000000000142843
Arabidopsis thaliana	5	4	CH_ath_125	40	295	0.000761652
Arabidopsis thaliana	1	5	CH_ath_46	11	14	0.000000351433
Arabidopsis thaliana	4	5	CH_ath_118	24	103	0.000229513
Arabidopsis thaliana	5	5	CH_ath_28	57	291	0.0000000000566585
Arabidopsis thaliana	4	6	CH_ath_130	24	103	0.000302782
Arabidopsis thaliana	5	6	CH_ath_26	61	291	0.000000000000413539
Beta vulgaris	Bvchr5.sca023	1	CH_bvu_101	6	7	0.00000159428
Beta vulgaris	Bvchr9.sca026	1	CH_bvu_82	6	6	0.000000230687
Beta vulgaris	Bvchr5.sca023	2	CH_bvu_214	6	7	0.000145735
Beta vulgaris	Bvchr9.sca026	2	CH_bvu_151	6	6	0.0000214006
Beta vulgaris	Bvchr5.sca023	3	CH_bvu_276	6	7	0.000259906
Beta vulgaris	Bvchr9.sca026	3	CH_bvu_198	6	6	0.0000382751
Brassica rapa	A02	3	CH_bra_329	6	7	0.000629253
Brassica rapa	A08	4	CH_bra_9	10	52	0.000000109776
Capsella rubella	scaffold_2	1	CH_cru_49	7	7	0.000000000495613
Capsella rubella	scaffold_3	1	CH_cru_203	4	4	0.00038505
Capsella rubella	scaffold_5	1	CH_cru_116	5	5	0.00000420306
Capsella rubella	scaffold_7	1	CH_cru_30	9	11	0.00000000000310858
Capsella rubella	scaffold_2	2	CH_cru_145	8	9	0.00000104642
Capsella rubella	scaffold_7	2	CH_cru_131	9	11	0.000000235169
Capsella rubella	scaffold_2	3	CH_cru_188	8	9	0.00000371678
Capsella rubella	scaffold_7	3	CH_cru_170	9	11	0.000000973989
Capsella rubella	scaffold_7	4	CH_cru_17	10	23	0.000000000622656
Capsella rubella	scaffold_7	5	CH_cru_50	11	24	0.0000104483
Carica papaya	supercontig_4	1	CH_cpa_175	4	11	0.000724838
Citrullus lanatus	Chr2	1	CH_cla_36	11	64	0.000000000026276
Citrullus lanatus	Chr2	2	CH_cla_139	13	65	0.0000844722
Citrullus lanatus	Chr5	2	CH_cla_170	5	5	0.000175896
Citrullus lanatus	Chr5	3	CH_cla_234	5	5	0.000244662
Citrullus lanatus	Chr2	4	CH_cla_11	11	64	0.000000000026276
Citrullus lanatus	Chr2	5	CH_cla_21	19	109	0.000000268437
Citrullus lanatus	Chr8	5	CH_cla_16	10	16	0.00000000886772
Citrullus lanatus	Chr2	6	CH_cla_27	20	109	0.000000093894
Citrus sinensis	scaffold00016	2	CH_csi_10	13	14	0.00000000000000270018
Citrus sinensis	scaffold00016	5	CH_csi_6	13	14	0.00000000000000270018
Citrus sinensis	scaffold00032	6	CH_csi_38	11	37	0.000613036
Cucumis melo	CM3.5_scaffold00024	2	CH_cme_104	9	20	0.00000344292
Cucumis melo	CM3.5_scaffold00024	3	CH_cme_166	9	20	0.0000072821
Cucumis melo	CM3.5_scaffold00024	5	CH_cme_30	10	31	0.0000158942
Cucumis melo	CM3.5_scaffold00051	5	CH_cme_16	10	15	0.00000000147051
Cucumis melo	CM3.5_scaffold00024	6	CH_cme_47	10	31	0.0000359916
Eucalyptus grandis	scaffold_8	1	CH_egr_222	18	67	0.000000000798604
Eucalyptus grandis	scaffold_5	3	CH_egr_413	26	80	0.0000000167933
Eucalyptus grandis	scaffold_9	3	CH_egr_864	13	33	0.000807418
Eucalyptus grandis	scaffold_5	4	CH_egr_31	42	160	1.02771e-26
Eucalyptus grandis	scaffold_9	6	CH_egr_318	13	33	0.000807418
Fragaria vesca	LG4	2	CH_fve_15	12	13	0.00000000000000454778
Fragaria vesca	scf0513158	2	CH_fve_83	8	9	0.0000000146168
Fragaria vesca	LG4	5	CH_fve_11	12	13	0.00000000000000454778
Fragaria vesca	scf0513178	5	CH_fve_69	12	65	0.000498066
Glycine max	Gm01	1	CH_gma_257	8	32	0.0000950888
Glycine max	Gm12	1	CH_gma_265	10	64	0.000120027
Glycine max	Gm16	1	CH_gma_10	17	21	1.33892e-25
Glycine max	Gm16	1	CH_gma_145	6	7	0.000000663501
Glycine max	Gm12	4	CH_gma_64	10	64	0.000120027
Glycine max	Gm16	4	CH_gma_13	17	21	1.33892e-25
Glycine max	Gm16	4	CH_gma_81	11	99	0.000770112
Glycine max	Gm15	5	CH_gma_54	10	18	0.000000986196
Glycine max	Gm15	6	CH_gma_66	10	18	0.00000222489
Gossypium raimondii	Chr02	1	CH_gra_44	10	13	0.000000000000204555
Gossypium raimondii	Chr09	1	CH_gra_38	18	80	0.0000000000000203515
Gossypium raimondii	Chr02	2	CH_gra_105	10	13	0.00000000893535
Gossypium raimondii	Chr09	2	CH_gra_88	21	80	0.00000000152386
Gossypium raimondii	Chr02	3	CH_gra_101	11	13	0.000000000240869
Gossypium raimondii	Chr09	3	CH_gra_49	27	80	0.00000000000000323641
Gossypium raimondii	Chr02	4	CH_gra_66	19	298	0.0000325603
Gossypium raimondii	Chr09	4	CH_gra_28	19	92	0.0000000000000121577
Lotus japonicus	chr6	2	CH_lja_23	8	11	0.0000000181197
Lotus japonicus	chr6	3	CH_lja_36	8	11	0.0000000387061
Malus domestica	8	6	CH_mdo_61	10	34	0.000634771
Manihot esculenta	scaffold01551	2	CH_mes_32	9	10	0.00000000256768
Manihot esculenta	scaffold04716	2	CH_mes_16	11	13	0.0000000000155873
Manihot esculenta	scaffold09354	2	CH_mes_194	5	5	0.000404465
Manihot esculenta	scaffold04716	5	CH_mes_7	11	13	0.0000000000155873
Medicago truncatula	chr8	1	CH_mtr_197	14	73	0.0000000292891
Medicago truncatula	chr8	1	CH_mtr_12	22	38	1.61169e-27
Medicago truncatula	chr3	2	CH_mtr_460	9	21	0.0000375893
Medicago truncatula	chr8	2	CH_mtr_414	15	75	0.0000177975
Medicago truncatula	chr3	3	CH_mtr_498	10	21	0.0000126118
Medicago truncatula	chr7	3	CH_mtr_847	13	56	0.000768996
Medicago truncatula	chr8	3	CH_mtr_44	28	67	4.70275e-20
Medicago truncatula	chr8	3	CH_mtr_468	17	75	0.0000066708
Medicago truncatula	chr3	4	CH_mtr_41	27	186	8.86531e-16
Medicago truncatula	chr8	4	CH_mtr_4	47	230	3.19352e-37
Medicago truncatula	chr8	5	CH_mtr_20	51	251	4.34669e-27
Medicago truncatula	chr7	6	CH_mtr_270	13	56	0.000768996
Medicago truncatula	chr8	6	CH_mtr_16	59	238	4.00079e-31
Oryza sativa ssp. japonica	1	1	CH_osa_233	5	6	0.0000222828
Oryza sativa ssp. japonica	11	1	CH_osa_44	13	29	0.0000000000000105173
Oryza sativa ssp. japonica	6	1	CH_osa_208	11	77	0.00000832835
Oryza sativa ssp. japonica	1	2	CH_osa_378	5	6	0.000458934
Oryza sativa ssp. japonica	11	2	CH_osa_69	13	29	0.0000000000259977
Oryza sativa ssp. japonica	12	2	CH_osa_377	8	26	0.000441723
Oryza sativa ssp. japonica	1	3	CH_osa_153	7	7	0.000000080219
Oryza sativa ssp. japonica	11	3	CH_osa_75	14	29	0.0000000000064213
Oryza sativa ssp. japonica	12	3	CH_osa_315	13	67	0.0000500549
Oryza sativa ssp. japonica	6	3	CH_osa_277	14	77	0.0000280309
Oryza sativa ssp. japonica	6	4	CH_osa_100	11	77	0.00000832835
Oryza sativa ssp. japonica	11	5	CH_osa_172	22	299	0.000686158
Oryza sativa ssp. japonica	12	5	CH_osa_131	15	110	0.0000362031
Oryza sativa ssp. japonica	12	6	CH_osa_142	13	67	0.0000500549
Oryza sativa ssp. japonica	6	6	CH_osa_135	14	77	0.0000280309
Physcomitrella patens	scaffold_60	1	CH_ppa_39	4	8	0.000146826
Populus trichocarpa	Chr05	1	CH_ptr_247	6	9	0.000038887
Populus trichocarpa	Chr06	1	CH_ptr_275	11	63	0.000109748
Populus trichocarpa	Chr19	1	CH_ptr_181	9	23	0.0000011016
Populus trichocarpa	Chr19	1	CH_ptr_115	10	19	0.00000000199279
Populus trichocarpa	scaffold_20	1	CH_ptr_14	23	42	1.35798e-26
Populus trichocarpa	scaffold_47	1	CH_ptr_102	12	30	0.000000000366664
Populus trichocarpa	Chr08	2	CH_ptr_167	8	8	0.0000000752266
Populus trichocarpa	Chr19	2	CH_ptr_208	16	55	0.00000113277
Populus trichocarpa	Chr08	3	CH_ptr_234	8	8	0.000000248164
Populus trichocarpa	Chr17	3	CH_ptr_168	22	73	0.0000000019956
Populus trichocarpa	Chr06	4	CH_ptr_99	11	63	0.000109748
Populus trichocarpa	Chr19	4	CH_ptr_59	10	19	0.00000000199279
Populus trichocarpa	scaffold_20	4	CH_ptr_13	23	42	1.35798e-26
Populus trichocarpa	scaffold_47	4	CH_ptr_56	12	30	0.000000000366664
Populus trichocarpa	Chr03	5	CH_ptr_85	30	222	0.00000705768
Populus trichocarpa	Chr19	5	CH_ptr_65	33	212	0.0000000166315
Prunus persica	scaffold_7	1	CH_ppe_182	7	10	0.00000168002
Prunus persica	scaffold_7	2	CH_ppe_362	7	10	0.000337085
Prunus persica	scaffold_7	3	CH_ppe_499	7	10	0.000638246
Prunus persica	scaffold_7	4	CH_ppe_27	33	242	0.000000000000010437
Ricinus communis	29726	2	CH_rco_34	11	15	0.0000000000845916
Ricinus communis	29889	2	CH_rco_80	7	7	0.000000158274
Ricinus communis	29726	5	CH_rco_16	11	15	0.0000000000845916
Solanum lycopersicum	ch07	1	CH_sly_42	15	34	8.25736e-18
Solanum lycopersicum	ch04	2	CH_sly_151	15	52	0.0000000679029
Solanum lycopersicum	ch07	2	CH_sly_86	15	34	0.0000000000430596
Solanum lycopersicum	ch04	3	CH_sly_621	15	79	0.000753714
Solanum lycopersicum	ch07	3	CH_sly_109	16	34	0.0000000000369376
Solanum lycopersicum	ch07	4	CH_sly_34	15	34	8.25736e-18
Solanum lycopersicum	ch07	5	CH_sly_47	15	34	0.0000000000430596
Solanum lycopersicum	ch07	6	CH_sly_59	16	34	0.0000000000369376
Solanum tuberosum	chr04	1	CH_stu_387	8	27	0.000136991
Solanum tuberosum	chr07	1	CH_stu_55	12	12	3.58879e-18
Solanum tuberosum	chr08	1	CH_stu_130	11	20	0.0000000000367034
Solanum tuberosum	chr07	2	CH_stu_82	12	12	0.0000000000000452741
Solanum tuberosum	chr04	3	CH_stu_531	11	23	0.0000401721
Solanum tuberosum	chr07	3	CH_stu_161	12	12	0.00000000000217457
Solanum tuberosum	chr07	4	CH_stu_46	12	12	3.58879e-18
Solanum tuberosum	chr08	4	CH_stu_76	11	20	0.0000000000367034
Solanum tuberosum	chr07	5	CH_stu_57	12	12	0.0000000000000452741
Solanum tuberosum	chr07	6	CH_stu_89	12	12	0.00000000000217457
Thellungiella parvula	ch2-4	1	CH_tpa_72	4	4	0.0000123695
Thellungiella parvula	ch5-6	2	CH_tpa_206	5	5	0.000666162
Thellungiella parvula	ch1-1	3	CH_tpa_60	8	8	0.0000000565412
Thellungiella parvula	ch1-1	4	CH_tpa_14	10	155	0.0000952928
Thellungiella parvula	ch1-1	6	CH_tpa_24	12	34	0.0000221395
Theobroma cacao	scaffold_6	1	CH_tca_73	14	80	0.00000000397717
Theobroma cacao	scaffold_7	1	CH_tca_138	12	75	0.00000068624
Theobroma cacao	scaffold_7	3	CH_tca_92	22	80	0.000000000402101
Theobroma cacao	scaffold_6	4	CH_tca_24	17	89	0.00000000000192497
Theobroma cacao	scaffold_7	5	CH_tca_60	29	262	0.0000187128
Theobroma cacao	scaffold_7	6	CH_tca_38	23	81	0.0000000000466167
Vitis vinifera	chr13	1	CH_vvi_209	5	6	0.0000345776
Vitis vinifera	chr14	1	CH_vvi_203	8	28	0.0000226721
Vitis vinifera	chr7	1	CH_vvi_122	8	15	0.0000000536484
Vitis vinifera	chr9	1	CH_vvi_136	7	11	0.000000246646
Vitis vinifera	chr13	2	CH_vvi_117	19	75	0.0000000142117
Vitis vinifera	chr14	4	CH_vvi_65	21	284	0.000000772737
Zea mays	4	1	CH_zma_147	4	5	0.0000608938
Zea mays	4	4	CH_zma_25	12	220	0.00000795812

Available child term results

GO term	Description	Number of clusters
GO:0002213	defense response to insect	2
GO:0002215	defense response to nematode	12
GO:0002229	defense response to oomycetes	4
GO:0002230	positive regulation of defense response to virus by host	23
GO:0002679	respiratory burst involved in defense response	19
GO:0002752	cell surface pattern recognition receptor signaling pathway	8
GO:0006953	acute-phase response	1
GO:0009616	virus induced gene silencing	5
GO:0009626	plant-type hypersensitive response	18
GO:0009814	defense response, incompatible interaction	3
GO:0009816	defense response to bacterium, incompatible interaction	20
GO:0009817	defense response to fungus, incompatible interaction	5
GO:0009818	defense response to protozoan, incompatible interaction	1
GO:0009861	jasmonic acid and ethylene-dependent systemic resistance	8
GO:0009864	induced systemic resistance, jasmonic acid mediated signaling pathway	1
GO:0009866	induced systemic resistance, ethylene mediated signaling pathway	1
GO:0009868	jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway	2
GO:0010113	negative regulation of systemic acquired resistance	1
GO:0010204	defense response signaling pathway, resistance gene-independent	2
GO:0016068	type I hypersensitivity	2
GO:0031348	negative regulation of defense response	17
GO:0031349	positive regulation of defense response	1
GO:0034052	positive regulation of plant-type hypersensitive response	2
GO:0042742	defense response to bacterium	22
GO:0045087	innate immune response	48
GO:0050688	regulation of defense response to virus	4
GO:0050691	regulation of defense response to virus by host	4
GO:0050832	defense response to fungus	35
GO:0051607	defense response to virus	4
GO:0052033	pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	10
GO:0080185	effector dependent induction by symbiont of host immune response	2
GO:0098542	defense response to other organism	4
GO:1900425	negative regulation of defense response to bacterium	25
GO:1902290	positive regulation of defense response to oomycetes	14

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V