PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0006887
Description: exocytosis

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A05	1	CH_bra_108	3	3	0.000042402
Brassica rapa	A05	2	CH_bra_162	3	3	0.000042402
Brassica rapa	A05	3	CH_bra_205	3	3	0.0000598909
Eucalyptus grandis	scaffold_10	1	CH_egr_177	5	6	0.00000000001764
Eucalyptus grandis	scaffold_10	2	CH_egr_227	5	6	0.00000000001764
Eucalyptus grandis	scaffold_10	3	CH_egr_270	5	6	0.0000000000278513
Glycine max	Gm02	1	CH_gma_254	3	3	0.0000855588
Glycine max	Gm03	1	CH_gma_184	4	8	0.0000067345
Glycine max	Gm06	1	CH_gma_88	5	9	0.0000000134551
Glycine max	Gm14	1	CH_gma_30	8	16	0.00000000000000169136
Glycine max	Gm03	2	CH_gma_229	4	8	0.0000067345
Glycine max	Gm14	2	CH_gma_30	8	16	0.00000000000000169136
Glycine max	Gm03	3	CH_gma_307	4	8	0.0000135889
Lotus japonicus	chr5	3	CH_lja_135	3	7	0.000107817
Medicago truncatula	chr4	3	CH_mtr_737	3	4	0.000282797
Medicago truncatula	chr5	3	CH_mtr_1	29	62	7.83622e-68
Medicago truncatula	chr5	6	CH_mtr_3	29	62	7.83622e-68
Medicago truncatula	chr4	9	CH_mtr_17	3	4	0.00016288
Medicago truncatula	chr5	9	CH_mtr_1	17	60	1.43592e-34
Medicago truncatula	chr5	12	CH_mtr_1	17	60	1.43592e-34
Oryza sativa ssp. japonica	5	1	CH_osa_110	5	10	0.0000000071724
Oryza sativa ssp. japonica	7	1	CH_osa_94	5	7	0.00000000059896
Oryza sativa ssp. japonica	5	2	CH_osa_111	5	10	0.0000000071724
Oryza sativa ssp. japonica	7	2	CH_osa_92	5	7	0.00000000059896
Oryza sativa ssp. japonica	5	3	CH_osa_89	6	12	0.0000000000735497
Populus trichocarpa	Chr17	1	CH_ptr_135	4	4	0.0000000151646
Populus trichocarpa	Chr17	2	CH_ptr_154	4	4	0.0000000151646
Populus trichocarpa	Chr17	3	CH_ptr_201	4	4	0.0000000194042
Solanum tuberosum	chr09	1	CH_stu_344	3	4	0.0000393433
Solanum tuberosum	chr09	2	CH_stu_375	3	4	0.0000393433
Solanum tuberosum	chr09	3	CH_stu_538	3	4	0.0000568536
Zea mays	4	1	CH_zma_173	3	4	0.00014983
Zea mays	4	2	CH_zma_172	3	4	0.00014983
Zea mays	4	3	CH_zma_89	4	5	0.000000284063

Available child term results

GO term	Description	Number of clusters
GO:0006904	vesicle docking involved in exocytosis	1

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V