PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrullus lanatus	Chr11	2	CH_cla_23	8	24	0.00000000000000802687
Citrullus lanatus	Chr11	3	CH_cla_30	8	24	0.00000000000000802687
Cucumis melo	CM3.5_scaffold00094	2	CH_cme_133	4	19	0.0000457587
Cucumis melo	CM3.5_scaffold00094	3	CH_cme_203	4	19	0.0000548852
Eucalyptus grandis	scaffold_9	2	CH_egr_542	3	3	0.0000187108
Eucalyptus grandis	scaffold_9	3	CH_egr_611	3	3	0.0000187108

GO term	Description	Number of clusters
GO:0046900	tetrahydrofolylpolyglutamate metabolic process	6
GO:0046901	tetrahydrofolylpolyglutamate biosynthetic process	4

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V