PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00157	1	CH_atr_220	2	3	0.000711275
Arabidopsis thaliana	4	1	CH_ath_346	3	6	0.000823867
Citrullus lanatus	Chr3	1	CH_cla_55	4	6	0.00000000582465
Citrus sinensis	scaffold00014	1	CH_csi_153	2	2	0.000694887
Cucumis melo	CM3.5_scaffold00004	1	CH_cme_63	4	11	0.0000000155285
Cucumis melo	CM3.5_scaffold00004	2	CH_cme_67	4	11	0.0000000310503
Cucumis melo	CM3.5_scaffold00004	3	CH_cme_112	4	11	0.000000093111
Fragaria vesca	LG6	1	CH_fve_132	3	7	0.00000658527
Fragaria vesca	LG6	2	CH_fve_172	3	7	0.000022572
Fragaria vesca	LG6	3	CH_fve_58	6	27	0.0000000000153243
Prunus persica	scaffold_7	1	CH_ppe_157	3	3	0.000000436501
Theobroma cacao	scaffold_5	3	CH_tca_249	4	28	0.00000957553

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V