PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0006662
Description: glycerol ether metabolic process

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr6.sca028	1	CH_bvu_198	3	5	0.000510078
Beta vulgaris	Bvchr6.sca028	2	CH_bvu_265	3	5	0.000510078
Beta vulgaris	Bvchr6.sca028	3	CH_bvu_356	3	5	0.000913248
Glycine max	Gm02	1	CH_gma_374	3	4	0.00086963
Glycine max	Gm09	1	CH_gma_276	3	3	0.000217665
Glycine max	Gm18	1	CH_gma_275	3	3	0.000217665
Glycine max	Gm02	2	CH_gma_468	3	4	0.00086963
Glycine max	Gm09	2	CH_gma_335	3	3	0.000217665
Glycine max	Gm18	2	CH_gma_334	3	3	0.000217665
Glycine max	Gm09	3	CH_gma_506	3	3	0.000455506
Glycine max	Gm18	3	CH_gma_505	3	3	0.000455506
Lotus japonicus	chr2	1	CH_lja_45	3	3	0.000005532
Lotus japonicus	chr2	2	CH_lja_66	3	3	0.000005532
Lotus japonicus	chr2	3	CH_lja_100	3	3	0.0000155926
Malus domestica	13	3	CH_mdo_359	3	4	0.000482983
Manihot esculenta	scaffold07351	1	CH_mes_89	4	9	0.0000237008
Manihot esculenta	scaffold07351	2	CH_mes_102	4	9	0.0000237008
Manihot esculenta	scaffold07351	3	CH_mes_154	4	9	0.0000435377
Medicago truncatula	chr2	1	CH_mtr_135	5	7	0.000000000213792
Medicago truncatula	chr5	1	CH_mtr_513	3	6	0.000457127
Medicago truncatula	chr2	2	CH_mtr_156	5	7	0.000000000213792
Medicago truncatula	chr5	2	CH_mtr_626	3	6	0.000457127
Medicago truncatula	chr2	3	CH_mtr_204	5	7	0.000000000532263
Medicago truncatula	chr5	3	CH_mtr_848	3	6	0.000781228
Populus trichocarpa	Chr19	1	CH_ptr_82	7	21	0.0000000000213044
Populus trichocarpa	Chr19	2	CH_ptr_99	7	21	0.0000000000213044
Populus trichocarpa	Chr19	3	CH_ptr_124	7	21	0.0000000000569369
Solanum lycopersicum	ch05	1	CH_sly_185	4	5	0.000000550707
Solanum lycopersicum	ch05	2	CH_sly_192	4	5	0.000000550707
Solanum lycopersicum	ch05	3	CH_sly_258	4	5	0.000000894941
Solanum tuberosum	chr05	1	CH_stu_87	6	6	0.000000000000126083
Solanum tuberosum	chr05	2	CH_stu_89	6	6	0.000000000000126083
Solanum tuberosum	chr05	3	CH_stu_140	6	6	0.00000000000034765

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V