PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_3	1	CH_aly_67	5	6	0.000000043611
Arabidopsis lyrata	scaffold_3	2	CH_aly_153	5	6	0.0000023076
Arabidopsis lyrata	scaffold_3	3	CH_aly_179	5	6	0.00000291754
Arabidopsis thaliana	1	4	CH_ath_60	12	68	0.00000879356
Arabidopsis thaliana	1	5	CH_ath_70	12	68	0.0000126981
Brassica rapa	A03	3	CH_bra_328	4	5	0.000578894
Solanum tuberosum	chr01	6	CH_stu_139	10	53	0.000000300113
Thellungiella parvula	ch3-1	1	CH_tpa_75	4	5	0.0000167139

GO term	Description	Number of clusters
GO:0001561	fatty acid alpha-oxidation	13
GO:0006633	fatty acid biosynthetic process	40
GO:0006635	fatty acid beta-oxidation	3
GO:0006636	unsaturated fatty acid biosynthetic process	3
GO:0010430	fatty acid omega-oxidation	4
GO:0010597	green leaf volatile biosynthetic process	32
GO:0019370	leukotriene biosynthetic process	7
GO:0019605	butyrate metabolic process	6
GO:0030497	fatty acid elongation	4
GO:0031408	oxylipin biosynthetic process	12
GO:0046459	short-chain fatty acid metabolic process	2
GO:0051791	medium-chain fatty acid metabolic process	4

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V