PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr2_un.sca003	2	CH_bvu_167	3	8	0.0000657081
Beta vulgaris	Bvchr2_un.sca003	3	CH_bvu_212	3	8	0.0000657081
Cucumis melo	CM3.5_scaffold00016	2	CH_cme_94	3	3	0.00000105472
Cucumis melo	CM3.5_scaffold00016	3	CH_cme_145	3	3	0.00000105472
Solanum lycopersicum	ch08	2	CH_sly_28	8	11	2.16339e-20
Solanum lycopersicum	ch08	3	CH_sly_33	8	11	2.16339e-20
Solanum tuberosum	chr08	2	CH_stu_25	10	13	2.49744e-26
Solanum tuberosum	chr08	2	CH_stu_569	3	9	0.000824241
Solanum tuberosum	chr08	3	CH_stu_40	10	13	2.49744e-26
Solanum tuberosum	chr08	3	CH_stu_762	3	9	0.000824241
Solanum tuberosum	chr08	5	CH_stu_24	10	13	2.49744e-26
Solanum tuberosum	chr08	6	CH_stu_40	10	13	2.49744e-26

GO term	Description	Number of clusters
GO:0033387	putrescine biosynthetic process from ornithine	8
GO:0042450	arginine biosynthetic process via ornithine	1

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V