PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00024	1	CH_atr_102	3	5	0.00000187359
Amborella trichopoda	scaffold00024	2	CH_atr_115	3	5	0.00000524543
Amborella trichopoda	scaffold00024	3	CH_atr_183	3	5	0.00000524543
Citrullus lanatus	Chr4	2	CH_cla_11	8	10	1.11521e-20
Citrullus lanatus	Chr4	3	CH_cla_14	8	10	1.11521e-20
Cucumis melo	CM3.5_scaffold00031	1	CH_cme_87	3	3	0.00000251375
Cucumis melo	CM3.5_scaffold00031	2	CH_cme_110	3	3	0.00000597674
Cucumis melo	CM3.5_scaffold00022	3	CH_cme_12	9	11	8.49137e-24
Cucumis melo	CM3.5_scaffold00031	3	CH_cme_169	3	3	0.00000851686
Lotus japonicus	chr1	1	CH_lja_5	6	18	0.000000000000264503
Lotus japonicus	chr1	2	CH_lja_7	6	18	0.00000000000171749
Lotus japonicus	chr1	3	CH_lja_9	6	18	0.00000000000171749
Medicago truncatula	chr7	1	CH_mtr_543	2	2	0.000644251
Oryza sativa ssp. japonica	2	1	CH_osa_85	4	5	0.000000000224863
Oryza sativa ssp. japonica	4	1	CH_osa_218	3	7	0.0000110237
Physcomitrella patens	scaffold_43	1	CH_ppa_33	3	9	0.0000660054
Physcomitrella patens	scaffold_43	2	CH_ppa_52	3	9	0.000250084
Solanum lycopersicum	ch03	3	CH_sly_577	4	43	0.000502785
Solanum tuberosum	chr09	1	CH_stu_128	4	4	0.0000000000193768
Solanum tuberosum	chr09	2	CH_stu_101	5	7	0.000000000000416903
Solanum tuberosum	chr09	3	CH_stu_156	5	7	0.00000000000131014
Zea mays	4	1	CH_zma_73	3	3	0.000000455277
Zea mays	5	1	CH_zma_29	4	4	0.0000000000801423
Zea mays	2	2	CH_zma_155	3	6	0.0000734552
Zea mays	4	2	CH_zma_89	3	3	0.00000367636
Zea mays	5	2	CH_zma_34	4	4	0.0000000014792

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V