PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrullus lanatus	Chr3	1	CH_cla_47	4	4	0.000000000610503
Citrullus lanatus	Chr3	2	CH_cla_52	4	4	0.000000000610503
Cucumis melo	CM3.5_scaffold00025	1	CH_cme_97	3	4	0.00000773231
Cucumis melo	CM3.5_scaffold00025	2	CH_cme_114	3	4	0.00000773231
Manihot esculenta	scaffold03802	1	CH_mes_73	3	3	0.00000491883
Manihot esculenta	scaffold03802	2	CH_mes_79	3	3	0.00000491883
Ricinus communis	30128	1	CH_rco_11	6	6	0.00000000000000102876
Ricinus communis	30128	2	CH_rco_11	6	6	0.00000000000000102876
Solanum lycopersicum	ch01	1	CH_sly_96	4	4	0.000000000405144
Solanum lycopersicum	ch01	2	CH_sly_96	4	4	0.000000000405144
Vitis vinifera	chr14	1	CH_vvi_28	8	12	2.73061e-20
Vitis vinifera	chr14	2	CH_vvi_27	8	12	2.73061e-20

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V