PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0006508
Description: proteolysis

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	5	CH_ath_154	28	220	0.000836351
Capsella rubella	scaffold_6	4	CH_cru_32	10	29	0.0000130294
Capsella rubella	scaffold_6	5	CH_cru_76	12	34	0.000307931
Citrus sinensis	scaffold00042	4	CH_csi_17	10	23	0.000000504008
Citrus sinensis	scaffold00042	5	CH_csi_19	10	23	0.00000207657
Citrus sinensis	scaffold00042	6	CH_csi_22	10	23	0.00000336576
Cucumis melo	CM3.5_scaffold00029	5	CH_cme_45	20	235	0.000326376
Cucumis melo	CM3.5_scaffold00029	6	CH_cme_50	22	235	0.0000626479
Eucalyptus grandis	scaffold_2	4	CH_egr_230	17	156	0.000272171
Eucalyptus grandis	scaffold_7	4	CH_egr_250	11	62	0.000744453
Eucalyptus grandis	scaffold_2	5	CH_egr_249	19	156	0.0000639386
Eucalyptus grandis	scaffold_3	5	CH_egr_109	12	15	0.000000000000172596
Eucalyptus grandis	scaffold_3	6	CH_egr_129	12	15	0.000000000000336497
Lotus japonicus	chr6	5	CH_lja_3	10	23	0.00000000105297
Lotus japonicus	chr6	6	CH_lja_5	10	23	0.00000000421439
Medicago truncatula	chr2	5	CH_mtr_177	20	260	0.0000994978
Medicago truncatula	chr2	6	CH_mtr_233	21	260	0.000207952
Populus trichocarpa	Chr07	2	CH_ptr_317	12	58	0.000091095
Populus trichocarpa	Chr07	3	CH_ptr_449	12	58	0.000169807
Populus trichocarpa	Chr01	5	CH_ptr_71	10	21	0.000000166768
Populus trichocarpa	Chr07	5	CH_ptr_99	12	58	0.000091095
Populus trichocarpa	Chr01	6	CH_ptr_99	10	21	0.00000028878
Populus trichocarpa	Chr07	6	CH_ptr_133	12	58	0.000169807
Prunus persica	scaffold_5	3	CH_ppe_103	17	27	0.0000000000581304
Prunus persica	scaffold_5	4	CH_ppe_33	28	108	0.0000000000000874825
Prunus persica	scaffold_5	5	CH_ppe_35	28	108	0.000000000000796351
Prunus persica	scaffold_5	6	CH_ppe_51	45	190	0.00000000000188221

Available child term results

GO term	Description	Number of clusters
GO:0006511	ubiquitin-dependent protein catabolic process	84
GO:0006515	misfolded or incompletely synthesized protein catabolic process	5
GO:0016598	protein arginylation	3
GO:0031145	anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	8
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	3
GO:0051603	proteolysis involved in cellular protein catabolic process	6

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V