PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00010	3	CH_atr_114	3	3	0.0000000937035
Citrullus lanatus	Chr2	1	CH_cla_156	2	2	0.000255341
Citrullus lanatus	Chr2	2	CH_cla_177	2	2	0.000255341
Citrullus lanatus	Chr2	3	CH_cla_237	2	2	0.000255341
Medicago truncatula	chr4	1	CH_mtr_583	2	3	0.000920316
Medicago truncatula	chr4	2	CH_mtr_706	2	3	0.000920316
Solanum tuberosum	chr10	1	CH_stu_476	2	2	0.000569314
Solanum tuberosum	chr10	2	CH_stu_553	2	2	0.000569314
Zea mays	1	1	CH_zma_207	2	2	0.000502917
Zea mays	1	2	CH_zma_218	2	2	0.000502917
Zea mays	1	3	CH_zma_300	2	2	0.000502917

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V