PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_4	1	CH_aly_196	3	4	0.000274324
Arabidopsis lyrata	scaffold_5	1	CH_aly_230	3	5	0.000685155
Arabidopsis lyrata	scaffold_4	2	CH_aly_271	3	4	0.000274324
Arabidopsis lyrata	scaffold_5	2	CH_aly_326	3	5	0.000685155
Arabidopsis lyrata	scaffold_4	3	CH_aly_341	3	4	0.000387425
Arabidopsis lyrata	scaffold_5	3	CH_aly_412	3	5	0.000967522
Brassica rapa	A02	3	CH_bra_332	3	4	0.000675258
Medicago truncatula	chr2	3	CH_mtr_648	5	28	0.000096994
Zea mays	8	1	CH_zma_184	3	4	0.000174087
Zea mays	8	2	CH_zma_189	3	4	0.000174087
Zea mays	8	3	CH_zma_284	3	4	0.000355167

GO term	Description	Number of clusters
GO:0006450	regulation of translational fidelity	4
GO:0045900	negative regulation of translational elongation	3
GO:0045901	positive regulation of translational elongation	3

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V