PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_1	3	CH_egr_638	5	14	0.0000368369

GO term	Description	Number of clusters
GO:0000244	spliceosomal tri-snRNP complex assembly	6
GO:0000245	spliceosomal complex assembly	6
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	6
GO:0000387	spliceosomal snRNP assembly	3
GO:0006370	7-methylguanosine mRNA capping	5
GO:0006376	mRNA splice site selection	1
GO:0006378	mRNA polyadenylation	2
GO:0035279	mRNA cleavage involved in gene silencing by miRNA	6
GO:0045292	mRNA cis splicing, via spliceosome	8
GO:0048024	regulation of mRNA splicing, via spliceosome	2
GO:1900363	regulation of mRNA polyadenylation	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V