Functional clusters   top

Information

Type
GO term
Identifier
GO:0006396
Description
RNA processing

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopodascaffold000603CH_atr_121660.000000181828
Citrullus lanatusChr33CH_cla_148550.0000153497
Citrus sinensisscaffold000051CH_csi_141450.000456467
Fragaria vescaLG21CH_fve_164440.0000469362
Fragaria vescaLG22CH_fve_301440.000438386
Fragaria vescaLG23CH_fve_428440.000792232
Solanum tuberosumchr014CH_stu_11110640.00000224473
Solanum tuberosumchr105CH_stu_14912960.0000863309
Solanum tuberosumchr106CH_stu_17913960.0000311163
Zea mays104CH_zma_2310800.0000048658
Zea mays105CH_zma_2210510.00000273616
Zea mays106CH_zma_2312510.0000000369384

Available child term results

GO term Description Number of clusters
GO:0000154rRNA modification42
GO:0000244spliceosomal tri-snRNP complex assembly6
GO:0000245spliceosomal complex assembly6
GO:0000289nuclear-transcribed mRNA poly(A) tail shortening6
GO:0000387spliceosomal snRNP assembly3
GO:0000966RNA 5'-end processing12
GO:0001682tRNA 5'-leader removal4
GO:0002098tRNA wobble uridine modification1
GO:0006364rRNA processing6
GO:00063707-methylguanosine mRNA capping5
GO:0006376mRNA splice site selection1
GO:0006378mRNA polyadenylation2
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation3
GO:0006397mRNA processing1
GO:0008033tRNA processing40
GO:0008380RNA splicing1
GO:0008616queuosine biosynthetic process8
GO:00094527-methylguanosine RNA capping1
GO:0016180snRNA processing1
GO:0031054pre-miRNA processing2
GO:0031123RNA 3'-end processing2
GO:0031167rRNA methylation5
GO:0031425chloroplast RNA processing2
GO:0034227tRNA thio-modification4
GO:0034470ncRNA processing4
GO:0035196production of miRNAs involved in gene silencing by miRNA2
GO:0035279mRNA cleavage involved in gene silencing by miRNA6
GO:0042779tRNA 3'-trailer cleavage1
GO:0043144snoRNA processing1
GO:0045292mRNA cis splicing, via spliceosome8
GO:0048024regulation of mRNA splicing, via spliceosome2
GO:0070526threonylcarbamoyladenosine biosynthetic process2
GO:0071076RNA 3' uridylation4
GO:1900363regulation of mRNA polyadenylation2

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1GOPrimary GO data only.230800.001X
2GOPrimary and orthology projected GO data.230800.001X
3GOAll GO data.230800.001X
4GOPrimary GO data only.101503000.001X
5GOPrimary and orthology projected GO data.101503000.001X
6GOAll GO data.101503000.001X
7GOPrimary GO data only.230800.001V
8GOPrimary and orthology projected GO data.230800.001V
9GOAll GO data.230800.001V
10GOPrimary GO data only.101503000.001V
11GOPrimary and orthology projected GO data.101503000.001V
12GOAll GO data.101503000.001V
13InterProNo filter applied.230800.001X
14InterProNo filter applied.101503000.001X
15InterProNo filter applied.230800.001V
16InterProNo filter applied.101503000.001V
17MapManNo filter applied.230800.001X
18MapManNo filter applied.101503000.001X
19MapManNo filter applied.230800.001V
20MapManNo filter applied.101503000.001V