Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0006396
- Description
- RNA processing
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | scaffold00060 | 3 | CH_atr_121 | 6 | 6 | 0.000000181828 |
Citrullus lanatus | Chr3 | 3 | CH_cla_148 | 5 | 5 | 0.0000153497 |
Citrus sinensis | scaffold00005 | 1 | CH_csi_141 | 4 | 5 | 0.000456467 |
Fragaria vesca | LG2 | 1 | CH_fve_164 | 4 | 4 | 0.0000469362 |
Fragaria vesca | LG2 | 2 | CH_fve_301 | 4 | 4 | 0.000438386 |
Fragaria vesca | LG2 | 3 | CH_fve_428 | 4 | 4 | 0.000792232 |
Solanum tuberosum | chr01 | 4 | CH_stu_111 | 10 | 64 | 0.00000224473 |
Solanum tuberosum | chr10 | 5 | CH_stu_149 | 12 | 96 | 0.0000863309 |
Solanum tuberosum | chr10 | 6 | CH_stu_179 | 13 | 96 | 0.0000311163 |
Zea mays | 10 | 4 | CH_zma_23 | 10 | 80 | 0.0000048658 |
Zea mays | 10 | 5 | CH_zma_22 | 10 | 51 | 0.00000273616 |
Zea mays | 10 | 6 | CH_zma_23 | 12 | 51 | 0.0000000369384 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0000154 | rRNA modification | 42 |
GO:0000244 | spliceosomal tri-snRNP complex assembly | 6 |
GO:0000245 | spliceosomal complex assembly | 6 |
GO:0000289 | nuclear-transcribed mRNA poly(A) tail shortening | 6 |
GO:0000387 | spliceosomal snRNP assembly | 3 |
GO:0000966 | RNA 5'-end processing | 12 |
GO:0001682 | tRNA 5'-leader removal | 4 |
GO:0002098 | tRNA wobble uridine modification | 1 |
GO:0006364 | rRNA processing | 6 |
GO:0006370 | 7-methylguanosine mRNA capping | 5 |
GO:0006376 | mRNA splice site selection | 1 |
GO:0006378 | mRNA polyadenylation | 2 |
GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | 3 |
GO:0006397 | mRNA processing | 1 |
GO:0008033 | tRNA processing | 40 |
GO:0008380 | RNA splicing | 1 |
GO:0008616 | queuosine biosynthetic process | 8 |
GO:0009452 | 7-methylguanosine RNA capping | 1 |
GO:0016180 | snRNA processing | 1 |
GO:0031054 | pre-miRNA processing | 2 |
GO:0031123 | RNA 3'-end processing | 2 |
GO:0031167 | rRNA methylation | 5 |
GO:0031425 | chloroplast RNA processing | 2 |
GO:0034227 | tRNA thio-modification | 4 |
GO:0034470 | ncRNA processing | 4 |
GO:0035196 | production of miRNAs involved in gene silencing by miRNA | 2 |
GO:0035279 | mRNA cleavage involved in gene silencing by miRNA | 6 |
GO:0042779 | tRNA 3'-trailer cleavage | 1 |
GO:0043144 | snoRNA processing | 1 |
GO:0045292 | mRNA cis splicing, via spliceosome | 8 |
GO:0048024 | regulation of mRNA splicing, via spliceosome | 2 |
GO:0070526 | threonylcarbamoyladenosine biosynthetic process | 2 |
GO:0071076 | RNA 3' uridylation | 4 |
GO:1900363 | regulation of mRNA polyadenylation | 2 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |