PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_3	3	CH_aly_300	3	3	0.000194393
Glycine max	Gm11	1	CH_gma_148	4	4	0.000000754929
Glycine max	Gm11	2	CH_gma_180	4	4	0.00000081441
Medicago truncatula	chr3	2	CH_mtr_74	6	6	0.0000000000000247525
Medicago truncatula	chr3	3	CH_mtr_107	6	6	0.000000000000104103
Physcomitrella patens	scaffold_240	3	CH_ppa_62	3	3	0.00010631
Solanum lycopersicum	ch10	2	CH_sly_448	5	65	0.000540656
Solanum lycopersicum	ch01	3	CH_sly_372	4	10	0.0000346039
Solanum tuberosum	chr01	2	CH_stu_530	3	4	0.000357942
Vitis vinifera	chr12	3	CH_vvi_366	3	3	0.000156333
Vitis vinifera	chr7	3	CH_vvi_365	3	3	0.000156333

GO term	Description	Number of clusters
GO:0006367	transcription initiation from RNA polymerase II promoter	12

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V